View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13325_low_1 (Length: 401)

Name: NF13325_low_1
Description: NF13325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13325_low_1
NF13325_low_1
[»] chr6 (17 HSPs)
chr6 (223-292)||(30440368-30440437)
chr6 (82-222)||(6228225-6228362)
chr6 (82-192)||(18903332-18903442)
chr6 (82-222)||(5641655-5641791)
chr6 (81-159)||(17217011-17217089)
chr6 (82-172)||(20415527-20415617)
chr6 (88-198)||(29321947-29322057)
chr6 (82-218)||(35065455-35065591)
chr6 (91-159)||(3200057-3200125)
chr6 (93-172)||(4854282-4854361)
chr6 (94-170)||(7164736-7164812)
chr6 (82-170)||(11611411-11611499)
chr6 (82-198)||(24794860-24794976)
chr6 (44-80)||(30440343-30440379)
chr6 (88-159)||(5757842-5757913)
chr6 (82-172)||(9357196-9357285)
chr6 (362-394)||(30440440-30440472)
[»] chr3 (31 HSPs)
chr3 (93-222)||(166781-166907)
chr3 (83-172)||(27394547-27394636)
chr3 (81-222)||(45431620-45431758)
chr3 (88-155)||(54457210-54457277)
chr3 (88-197)||(1102667-1102776)
chr3 (83-172)||(29645793-29645882)
chr3 (88-222)||(33528176-33528307)
chr3 (93-172)||(50271769-50271848)
chr3 (88-198)||(27817039-27817148)
chr3 (83-198)||(47864650-47864765)
chr3 (82-222)||(11483606-11483743)
chr3 (109-221)||(29226320-29226429)
chr3 (88-198)||(46798596-46798706)
chr3 (82-172)||(49429500-49429590)
chr3 (88-198)||(50381728-50381838)
chr3 (82-159)||(50676832-50676909)
chr3 (88-192)||(37756384-37756488)
chr3 (82-153)||(8930942-8931013)
chr3 (88-159)||(31435472-31435543)
chr3 (93-159)||(43897655-43897721)
chr3 (82-198)||(1325296-1325413)
chr3 (83-152)||(41768433-41768502)
chr3 (90-138)||(38414957-38415005)
chr3 (83-159)||(39739327-39739403)
chr3 (119-172)||(24537867-24537921)
chr3 (119-172)||(46328925-46328979)
chr3 (119-172)||(54983706-54983760)
chr3 (128-172)||(3973342-3973386)
chr3 (128-172)||(3996490-3996534)
chr3 (128-172)||(16277962-16278006)
chr3 (88-172)||(44062013-44062096)
[»] scaffold0001 (1 HSPs)
scaffold0001 (82-226)||(419701-419842)
[»] chr2 (30 HSPs)
chr2 (88-222)||(20435774-20435904)
chr2 (83-222)||(24202143-24202279)
chr2 (82-172)||(18424117-18424207)
chr2 (93-178)||(42541189-42541274)
chr2 (83-171)||(29090456-29090544)
chr2 (82-159)||(37886190-37886267)
chr2 (88-222)||(20375586-20375716)
chr2 (82-170)||(41749989-41750076)
chr2 (88-159)||(37592193-37592264)
chr2 (88-159)||(43027208-43027279)
chr2 (82-192)||(5901796-5901906)
chr2 (88-198)||(17543061-17543171)
chr2 (82-152)||(34107554-34107624)
chr2 (82-159)||(3330166-3330243)
chr2 (82-159)||(17376419-17376496)
chr2 (82-162)||(5207142-5207222)
chr2 (82-170)||(33065222-33065310)
chr2 (89-172)||(1962866-1962948)
chr2 (88-159)||(33613576-33613647)
chr2 (88-159)||(42678295-42678366)
chr2 (119-172)||(3037623-3037677)
chr2 (119-172)||(7086293-7086347)
chr2 (88-138)||(10745475-10745525)
chr2 (82-140)||(38413028-38413085)
chr2 (83-137)||(42998710-42998764)
chr2 (120-172)||(17154689-17154742)
chr2 (119-171)||(19905656-19905709)
chr2 (128-172)||(580794-580838)
chr2 (119-170)||(8234793-8234845)
chr2 (128-172)||(22297463-22297507)
[»] chr1 (31 HSPs)
chr1 (82-198)||(43109203-43109319)
chr1 (82-222)||(24253608-24253745)
chr1 (88-172)||(19424086-19424170)
chr1 (82-221)||(24134589-24134725)
chr1 (93-168)||(29332328-29332403)
chr1 (83-192)||(14262687-14262796)
chr1 (88-172)||(42946438-42946522)
chr1 (82-222)||(50011500-50011637)
chr1 (83-172)||(2350341-2350430)
chr1 (83-222)||(34702279-34702415)
chr1 (83-172)||(35195577-35195666)
chr1 (82-169)||(46532460-46532547)
chr1 (88-170)||(10123024-10123106)
chr1 (82-172)||(25031462-25031552)
chr1 (88-170)||(40061485-40061567)
chr1 (88-170)||(44583629-44583711)
chr1 (88-198)||(48497184-48497294)
chr1 (114-172)||(52833103-52833161)
chr1 (83-222)||(22779216-22779352)
chr1 (82-198)||(30735842-30735958)
chr1 (88-222)||(49619965-49620096)
chr1 (82-156)||(10790458-10790532)
chr1 (88-198)||(12973249-12973359)
chr1 (119-172)||(19793566-19793620)
chr1 (88-138)||(27054770-27054820)
chr1 (83-164)||(3347669-3347750)
chr1 (82-159)||(16985900-16985977)
chr1 (82-159)||(23368697-23368774)
chr1 (82-192)||(25800296-25800408)
chr1 (82-198)||(47651886-47652001)
chr1 (128-172)||(50199487-50199531)
[»] chr5 (18 HSPs)
chr5 (83-222)||(38503223-38503359)
chr5 (81-160)||(15680865-15680944)
chr5 (82-172)||(4395816-4395906)
chr5 (88-192)||(3294103-3294207)
chr5 (82-198)||(17077375-17077491)
chr5 (83-221)||(31250141-31250276)
chr5 (83-222)||(34729463-34729600)
chr5 (111-198)||(43227880-43227967)
chr5 (94-164)||(9628165-9628235)
chr5 (95-145)||(12256474-12256524)
chr5 (88-198)||(15470592-15470702)
chr5 (82-172)||(20191481-20191571)
chr5 (82-172)||(1572150-1572240)
chr5 (119-172)||(8015875-8015929)
chr5 (83-168)||(42208960-42209045)
chr5 (88-168)||(5039724-5039804)
chr5 (96-192)||(31154098-31154193)
chr5 (119-159)||(35168634-35168674)
[»] chr4 (39 HSPs)
chr4 (82-221)||(38690660-38690796)
chr4 (88-192)||(11491190-11491294)
chr4 (82-198)||(16556465-16556581)
chr4 (82-177)||(44251292-44251387)
chr4 (82-172)||(37574312-37574402)
chr4 (82-222)||(51974740-51974877)
chr4 (82-199)||(2766723-2766840)
chr4 (82-172)||(29889743-29889833)
chr4 (82-221)||(40406925-40407062)
chr4 (88-170)||(45355689-45355770)
chr4 (88-170)||(45369430-45369511)
chr4 (88-190)||(50815729-50815831)
chr4 (82-172)||(56555588-56555678)
chr4 (83-172)||(37889572-37889661)
chr4 (82-198)||(46283136-46283252)
chr4 (82-138)||(49811373-49811429)
chr4 (82-156)||(36993097-36993171)
chr4 (82-164)||(48404102-48404184)
chr4 (89-155)||(49607607-49607673)
chr4 (88-169)||(26885371-26885452)
chr4 (88-160)||(35305033-35305106)
chr4 (88-218)||(13539811-13539936)
chr4 (82-138)||(56360635-56360691)
chr4 (119-169)||(22478741-22478792)
chr4 (83-198)||(42154580-42154695)
chr4 (119-172)||(37032180-37032234)
chr4 (114-192)||(43362165-43362243)
chr4 (82-164)||(45847891-45847973)
chr4 (119-172)||(47017947-47018001)
chr4 (124-193)||(6930573-6930642)
chr4 (82-135)||(22341827-22341880)
chr4 (82-199)||(32037580-32037697)
chr4 (132-172)||(1589172-1589212)
chr4 (132-172)||(10098165-10098205)
chr4 (128-172)||(20610779-20610823)
chr4 (83-159)||(22525441-22525517)
chr4 (88-164)||(29430545-29430621)
chr4 (128-172)||(31601846-31601890)
chr4 (128-172)||(43115308-43115352)
[»] chr7 (34 HSPs)
chr7 (82-198)||(15025170-15025286)
chr7 (82-222)||(48433675-48433812)
chr7 (88-177)||(5228105-5228194)
chr7 (111-222)||(40273814-40273922)
chr7 (82-159)||(48258149-48258226)
chr7 (82-170)||(26606074-26606162)
chr7 (82-169)||(28914842-28914929)
chr7 (88-198)||(4956063-4956173)
chr7 (82-172)||(10091422-10091512)
chr7 (88-198)||(38378233-38378343)
chr7 (82-170)||(24030027-24030114)
chr7 (100-222)||(44662446-44662565)
chr7 (111-198)||(12166096-12166183)
chr7 (83-170)||(13295341-13295428)
chr7 (83-153)||(20529955-20530025)
chr7 (146-222)||(46570000-46570073)
chr7 (93-190)||(3961384-3961481)
chr7 (83-172)||(20013621-20013710)
chr7 (88-168)||(6548683-6548763)
chr7 (88-218)||(9668787-9668912)
chr7 (88-192)||(40011732-40011836)
chr7 (93-172)||(14707332-14707411)
chr7 (93-172)||(31793508-31793587)
chr7 (114-223)||(33248799-33248905)
chr7 (114-223)||(37665736-37665842)
chr7 (119-172)||(21285354-21285408)
chr7 (82-222)||(23824557-23824693)
chr7 (119-172)||(29658273-29658327)
chr7 (88-169)||(3889771-3889852)
chr7 (82-198)||(27454025-27454142)
chr7 (83-172)||(46195958-46196047)
chr7 (128-172)||(27047726-27047770)
chr7 (128-172)||(35195883-35195927)
chr7 (111-159)||(36977235-36977283)
[»] chr8 (27 HSPs)
chr8 (82-198)||(4259873-4259989)
chr8 (96-222)||(19957300-19957423)
chr8 (88-170)||(10201304-10201386)
chr8 (82-172)||(17855689-17855779)
chr8 (81-198)||(39104621-39104737)
chr8 (111-222)||(41454821-41454929)
chr8 (88-192)||(22652703-22652807)
chr8 (83-159)||(39172179-39172255)
chr8 (83-138)||(8145847-8145902)
chr8 (82-172)||(31153524-31153615)
chr8 (82-172)||(5904339-5904429)
chr8 (88-198)||(19733040-19733150)
chr8 (82-192)||(43413851-43413961)
chr8 (111-221)||(1032564-1032671)
chr8 (82-198)||(38289200-38289316)
chr8 (88-192)||(45536738-45536842)
chr8 (83-170)||(1360101-1360187)
chr8 (119-172)||(4798542-4798596)
chr8 (119-172)||(5245518-5245572)
chr8 (88-198)||(8349454-8349564)
chr8 (119-172)||(15042366-15042420)
chr8 (82-198)||(8350450-8350567)
chr8 (82-198)||(41845391-41845510)
chr8 (111-159)||(279991-280039)
chr8 (111-159)||(635813-635861)
chr8 (111-159)||(821616-821664)
chr8 (114-170)||(43508445-43508501)
[»] scaffold0308 (1 HSPs)
scaffold0308 (82-172)||(7116-7204)
[»] scaffold0219 (1 HSPs)
scaffold0219 (128-172)||(6644-6688)


Alignment Details
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 30440368 - 30440437
Alignment:
Q  223 ccaacttgctcgttttatgtgtggagggactgacttccagttgaaaccatatcagcttgcatagcagcag 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30440368 ccaacttgctcgttttatgtgtggagggactgacttccagttgaaaccatatcagcttgcatagcagcag 30440437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 6228225 - 6228362
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| |    
T  6228225 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgt 6228324  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| |||   || ||||||||||||| ||||||    
T  6228325 gcattatcccttacc---aaatgagctaagctcatggggac 6228362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 18903332 - 18903442
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| |    
T  18903332 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgt 18903431  T
Q  182 gtattatccct 192  Q
    |||||||||||    
T  18903432 gtattatccct 18903442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 5641655 - 5641791
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||||||||||||| ||| ||| ||||||| |||||||||||||||||||| | || ||||||| ||||||| |||||  ||||| |||||| |    
T  5641655 tttttttttttgtcaagtagtctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggagttcgaaccccgg-tcctgcataaattat 5641753  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||| | |||   ||||||| ||||| |||||||||    
T  5641754 gcattatccattacc---aagtgagttaagcccacggggac 5641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 17217089 - 17217011
Alignment:
Q  81 gtttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||| ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||| |||||||    
T  17217089 gtttttttttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaa 17217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 20415527 - 20415617
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||| |||||| ||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| || |||||||||    
T  20415527 ttttttttttggtcaagcagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccctggcccctgc 20415617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 29321947 - 29322057
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||| |||  || ||||||| |||||||||||| | ||||| | ||||||| |||||||||| ||| ||||||||  | ||| || ||||    
T  29321947 tttttgtcaagtagtctagtggctagagaaattcaccttaaagataaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcatta 29322046  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  29322047 tcccttaccaa 29322057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 35065455 - 35065591
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||||||| ||| || ||| ||||||| ||||| ||||| |||||||| | |  |||||| |||||||| |||||||||| | |||||| |    
T  35065455 tttttttttttgtcaagcagcttagcggctagagaaattcactttaaatgtgaataagtagagtgtccgtggttcgaa-cccggcccctacataaattat 35065553  T
Q  182 gtattatccctaacc-aagaagtgagctaagctcacgg 218  Q
    | ||||||||| ||| ||  | ||||||||||||||||    
T  35065554 gcattatcccttaccaaattaatgagctaagctcacgg 35065591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 3200057 - 3200125
Alignment:
Q  91 ttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||||||||||| || ||||||| |||||||||||| ||||||||| || ||||||  |||||||    
T  3200057 ttgtcaagtagcctattggctagagaaattcaccttaaagatgaataaattggctgtccgaagttcgaa 3200125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 4854282 - 4854361
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| |||  || ||||||| || ||||||||| ||||||| | || ||||||||||||||| ||||||||||||    
T  4854282 gtcaagtaggctagtggttagagaaatttaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgc 4854361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 7164812 - 7164736
Alignment:
Q  94 tcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    |||||||| ||| ||| ||||||| |||||||||||||||||||| | || ||  |||||||||||  |||||||||    
T  7164812 tcaagtagtctagcggctagagaaattcaccttaaaggtgaataagtggggtggtcggggttcgaactccggcccct 7164736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 11611499 - 11611411
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||| ||||||||||||||||||   | ||||||| ||||| |||||| ||||||| | || ||||| ||||||||| ||| ||||||    
T  11611499 tttttttttttgtcaagtagcctaattgctagagaaattcacattaaagatgaataagtggggtgtccagggttcgaaccccagcccct 11611411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 24794860 - 24794976
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||||||||  ||| |||  || ||||||| |||| ||||||  ||||||| | ||||||||||||||||||||||  |||||||  | ||| |    
T  24794860 tttttttttttgtcagatagtctagtggctagagaaattcatcttaaatatgaataagtgggatgtccggggttcgaatcccaacccctgcacatattgt 24794959  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  24794960 gcattatcccttaccaa 24794976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 30440343 - 30440379
Alignment:
Q  44 gttgttgtcatttgaggatttatcaccaacttgctcg 80  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30440343 gttgttgtcctttgaggatttatcaccaacttgctcg 30440379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 5757842 - 5757913
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||||||||||||  ||| ||||||| ||||||||||| |||||||| |  | ||| |||||||||||    
T  5757842 tttttgtcaagtagcctggcggctagagaaattcaccttaaatgtgaataagtgaggtgttcggggttcgaa 5757913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 9357285 - 9357196
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||||||||| |||||||  |  ||||||| ||||||||||||||||||||||  | |||| || ||||||| ||| ||||||||    
T  9357285 tttttttttttgtcaa-tagcctagtgattagagaaattcaccttaaaggtgaataaattaggtgtctggagttcgaaccccagcccctgc 9357196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 30440440 - 30440472
Alignment:
Q  362 tgctttaaatatttcatcctttcctctctgctc 394  Q
    ||||||||||||||||||||||||||| |||||    
T  30440440 tgctttaaatatttcatcctttcctctgtgctc 30440472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 166907 - 166781
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccct 192  Q
    ||||||||||||| ||| || |||| ||||| |||||||||||||| |  | |||| |||||||||| |||||||||||| |||||| || |||||||||    
T  166907 gtcaagtagcctagcggctaaagaaattcactttaaaggtgaataagtgaggtgtctggggttcgaaccccggcccctgcataaattatgcattatccct 166808  T
Q  193 aaccaagaagtgagctaagctcacggggac 222  Q
     |||   |||||||||||||||||||||||    
T  166807 tacc---aagtgagctaagctcacggggac 166781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 27394636 - 27394547
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||| | || |||||||||||| || ||| ||||||||    
T  27394636 ttttttttttgtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgc 27394547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 45431758 - 45431620
Alignment:
Q  81 gtttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattt 180  Q
    |||||| |||| || |||||||||| ||| ||| ||| |||||||||||||||||||| | || ||||||||||||||| || | ||||||| |||| |     
T  45431758 gttttttttttggttaagtagcctagcggctagggaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccctgacccctgcataaaata 45431659  T
Q  181 tgtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
     | ||||||||| |||   |||||||||||||||| ||||||    
T  45431658 cgcattatcccttacc---aagtgagctaagctcatggggac 45431620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 54457277 - 54457210
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggtt 155  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||||||||||| || |||||||||||    
T  54457277 tttttgtcaagtagcctagcggctagagaaattcaccttaaaggtgaataaatggggtgtccggggtt 54457210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 1102667 - 1102776
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||||||||||| | || |||||  ||||||||  ||| ||||||| |||||| || ||||    
T  1102667 ttttggtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccatggttcgaactccgtcccctgcataaattatgcatta 1102766  T
Q  188 tccctaacca 197  Q
    ||||| ||||    
T  1102767 tcccttacca 1102776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 29645793 - 29645882
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| |||||||||||||| |||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||    
T  29645793 ttttttttttgtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgc 29645882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 33528176 - 33528307
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || |||| |||||||||| ||| ||||||||  ||||| || ||||    
T  33528176 ttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcatta 33528275  T
Q  188 tccctaaccaagaagtgagctaagctcacggggac 222  Q
    ||||| |||   || ||||||||||||| ||||||    
T  33528276 tcccttacc---aaatgagctaagctcatggggac 33528307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 50271848 - 50271769
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||| ||| ||||||| |||||||||||||||||||| | |||||| ||||||||||| | ||||||||||    
T  50271848 gtcaagtagtctagcggttagagaaattcaccttaaaggtgaataagtgggatgtacggggttcgaaccacggcccctgc 50271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 27817039 - 27817148
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||||||||||||||  || ||||||| |||| ||||||| ||||||||| || ||||| |||||||||  |||||||||||  ||||| || ||||    
T  27817039 tttttgtcaagtagcctagtggctagagaaattcaacttaaagatgaataaatggggtgtcc-gggttcgaactccggcccctgcacaaattgtgcatta 27817137  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  27817138 tcccttaccaa 27817148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 47864765 - 47864650
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| |||  |||||||  | ||| ||    
T  47864765 tttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccaacccctgcacatattgtg 47864666  T
Q  183 tattatccctaaccaa 198  Q
     ||||||||| |||||    
T  47864665 cattatcccttaccaa 47864650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 11483743 - 11483606
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| ||||||||| |||   | ||||||| |||||||||||| ||||||| | || ||||||| ||||||| || |||||||||  | |||||    
T  11483743 ttttttttttggtcaagtagtctagttgctagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaaccctggcccctgcacatatttt 11483644  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| |||   || ||||||||||||| ||||||    
T  11483643 gcattatcccttacc---aaatgagctaagctcatggggac 11483606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 29226429 - 29226320
Alignment:
Q  109 gatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagct 208  Q
    ||||||||| |||||||||||| ||||||| | || ||| ||||||||||| ||||||||||||  | ||| ||| |||||||| |||   || ||||||    
T  29226429 gatagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccggcccctgcacatattgtgtgttatcccttacc---aaatgagct 29226333  T
Q  209 aagctcacgggga 221  Q
    ||||||| |||||    
T  29226332 aagctcatgggga 29226320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 46798706 - 46798596
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| |  ||||||||| ||||||| | || ||||| ||||||||||||||||||||||  | ||| || ||||    
T  46798706 ttttggtcaagtagcctagtggttagagaaatctaccttaaagatgaataagtggggtgtccagggttcgaatcccggcccctgcacatattgtgcatta 46798607  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  46798606 tccctcaccaa 46798596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 49429590 - 49429500
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||| ||||| |||| || ||| ||||||| |||||||||||||||||||| | || ||||||||||||||| || || ||||||    
T  49429590 ttttttttttggtcaaatagcttagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccctggtccctgc 49429500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 50381838 - 50381728
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||| ||||||  || ||||||| |||||||||||| ||||||| | || |||||||| |||||| |||| ||||||| || ||| || ||||    
T  50381838 ttttggtcaagcagcctaatggctagagaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatatattgtgcatta 50381739  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  50381738 tcccttaccaa 50381728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 50676832 - 50676909
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| |||||||||||||| |||  || ||||||| |||||||||||||||||||| | || ||| |||||||||||    
T  50676832 tttttttttttgtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaa 50676909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 37756384 - 37756488
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||| |||||||||| |||  ||||||  |||| |||||||||||||| | || |||  |||||||||| ||| |||||||| |||||| || ||||    
T  37756384 tttttgtgaagtagcctagcggcgagagaaactcacgttaaaggtgaataagtggggtgtttggggttcgaaccccagcccctgcataaattatgcatta 37756483  T
Q  188 tccct 192  Q
    |||||    
T  37756484 tccct 37756488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 8930942 - 8931013
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccgggg 153  Q
    ||||| |||| ||||||||||||| ||| ||||||| ||||| |||||||||||||| | || |||||||||    
T  8930942 ttttttttttggtcaagtagcctagcggctagagaaattcactttaaaggtgaataagtggggtgtccgggg 8931013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 31435472 - 31435543
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||||||||| |||  || ||||||| |||||||||||| ||||||| | ||||||||| ||||||||    
T  31435472 tttttgtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaa 31435543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 43897721 - 43897655
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||| | || |||| | ||||||||    
T  43897721 gtcaagtagcctaacggttagagaaattcaccttaaaggtgaataagtggggtgtctgaggttcgaa 43897655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 1325296 - 1325413
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaat-cggatgtccggggttcgaatcccggcccctgcttaaattt 180  Q
    ||||| |||||||||||||| |||  || || |||| |||| ||||||| |||||||||  || ||||||||||||||||||||  |||||  || |||     
T  1325296 tttttttttttgtcaagtagtctagtggctaaagaaattcatcttaaagatgaataaatgggggtgtccggggttcgaatcccgatccctgtatatattg 1325395  T
Q  181 tgtattatccctaaccaa 198  Q
    || ||||||||| |||||    
T  1325396 tgcattatcccttaccaa 1325413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 41768502 - 41768433
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggg 152  Q
    |||||||||  |||| |||| || ||| ||||||| |||||||||||||||||||||| |||||| ||||    
T  41768502 ttttcttttgatcaactagcttagcggctagagaaattcaccttaaaggtgaataaataggatgttcggg 41768433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 38415005 - 38414957
Alignment:
Q  90 tttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataa 138  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  38415005 tttgtcaagtagcctagcggccagagaaattcaccttaaaggtgaataa 38414957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 39739403 - 39739327
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||| |||||||||||||| |||  || ||||||| |||||||||||| ||||||| |  | |||||||||||||||    
T  39739403 ttttttttttgtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaa 39739327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 24537921 - 24537867
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  24537921 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 24537867  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 46328925 - 46328979
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  46328925 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 46328979  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 54983706 - 54983760
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||||| || ||||||||||||||| |||| |||||||    
T  54983706 ttcaccttataaggtgaataaatggggtgtccggggttcgaaccccgacccctgc 54983760  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 3973386 - 3973342
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||| || |||||||||||| |||| ||||||||||    
T  3973386 aaggtgaataaatggggtgtccggggttcaaatcgcggcccctgc 3973342  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 3996490 - 3996534
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||| || |||||||||||| |||| ||||||||||    
T  3996490 aaggtgaataaatggggtgtccggggttcaaatcgcggcccctgc 3996534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 16277962 - 16278006
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||| | |||||||||| |||||||||||| |||||||    
T  16277962 aaggtgaataagtgggatgtccggagttcgaatcccgacccctgc 16278006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 44062013 - 44062096
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||||||||||||| |||  || ||||||  |||||||||||| ||||||| | || ||| |||||||||||  |||||||||||    
T  44062013 tttttgtcaagtagtctagtggctagagacattcaccttaaagatgaataagtggggtgt-cggggttcgaactccggcccctgc 44062096  T

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Target: scaffold0001 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 419842 - 419701
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| |    
T  419842 tttttttttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgt 419743  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggacccaa 226  Q
      ||||||||| |||   || ||||||||||||| ||||||||||    
T  419742 tcattatcccttacc---aaatgagctaagctcatggggacccaa 419701  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 20435904 - 20435774
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||||||| || |||||||| |||||||||||| ||||||| | ||||||||| |||||||| ||||| || ||| |||| | || | ||    
T  20435904 tttttgtcaagtagcctagcg-atagagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaaccccgggccttgcataaaatatgcaata 20435806  T
Q  188 tccctaaccaagaagtgagctaagctcacggggac 222  Q
    ||||| |||   |||||||||||||||||||||||    
T  20435805 tcccttacc---aagtgagctaagctcacggggac 20435774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 24202279 - 24202143
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||| |||||| |||||| ||| | ||||| |||||||||||||||||  | | || ||||||||||||||| |||||||||||| || ||  ||    
T  24202279 tttttttttggtcaagcagcctagcggctggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatg 24202180  T
Q  183 tattatccctaaccaagaagtgagctaagctcacggggac 222  Q
     ||||||||| |||   |||||||||||||||||||||||    
T  24202179 cattatcccttacc---aagtgagctaagctcacggggac 24202143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 18424117 - 18424207
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| || |||| ||||||||||  || ||||||| |||||||||||| ||||||| | |||||||||| ||||||| ||||||||||||    
T  18424117 ttttttttgttgttaagtagcctagtggctagagaaattcaccttaaagatgaataagtgggatgtccggagttcgaaccccggcccctgc 18424207  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 42541274 - 42541189
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaat 178  Q
    ||||||||||||| ||| ||||||| |||||||||||||||| ||| | || |||| |||||||||| ||| |||||||| |||||    
T  42541274 gtcaagtagcctagcggctagagaaattcaccttaaaggtgagtaagtggggtgtctggggttcgaaccccagcccctgcataaat 42541189  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 29090544 - 29090456
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctg 171  Q
    |||| |||||||||||||||||| ||| | ||||| |||||||||||| ||||||| |  | |||||||||||||||  ||||||||||    
T  29090544 ttttttttttgtcaagtagcctagcggctggagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaactccggcccctg 29090456  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 37886190 - 37886267
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| ||||||| |||||| ||| ||| ||||||| |||||||||||||||||||| | || ||||| |||||||||    
T  37886190 tttttttttttgtaaagtagtctaacggttagagaaattcaccttaaaggtgaataagtggggtgtccagggttcgaa 37886267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 20375716 - 20375586
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||||||| |  |||||||| |||||||||||| ||||||| | |  |||| | |||||||| ||||| |||||| |||| |  | | ||    
T  20375716 tttttgtcaagtagcctagca-atagagaaattcaccttaaagatgaataagtggcgtgtctgaggttcgaaccccggaccctgcataaaataggcaata 20375618  T
Q  188 tccctaaccaagaagtgagctaagctcacggggac 222  Q
    ||||| |||   |||||||||||||||||||||||    
T  20375617 tcccttacc---aagtgagctaagctcacggggac 20375586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 41750076 - 41749989
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || |||||||||||| || |||| |||||    
T  41750076 tttttttttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagt-gggtgtccggggttcaaaccccgacccct 41749989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 37592193 - 37592264
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||||||||| ||| ||| ||||||| |||||||||||||| ||||| | || |||| ||||||||||    
T  37592193 tttttgtcaagtagtctagcggctagagaaattcaccttaaaggtaaataagtggggtgtctggggttcgaa 37592264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 43027279 - 43027208
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||| ||||||||| |||  || ||||||| |||||||||||||||||||||| || |||| ||||||||||    
T  43027279 ttttggtcaagtagtctagtggctagagaaattcaccttaaaggtgaataaatggggtgtctggggttcgaa 43027208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 5901796 - 5901906
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||| ||||||||||||  || || |||| |||||||| ||| ||||||| | || ||||||||||| | | ||||||||||||  ||||| |    
T  5901796 tttttttttttatcaagtagcctagtggctaaagaaattcacctttaagatgaataagtggggtgtccggggtttgtaccccggcccctgcagaaattgt 5901895  T
Q  182 gtattatccct 192  Q
    | |||||||||    
T  5901896 gcattatccct 5901906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 17543061 - 17543171
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||||||||||||||  || |||||||  |||| |||||| ||||||| | || ||||||| |||||||  |||||||||||  | ||| || ||||    
T  17543061 tttttgtcaagtagcctagtggttagagaaagtcacattaaagatgaataagtggggtgtccggcgttcgaactccggcccctgcacatattgtgcatta 17543160  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  17543161 tcccttaccaa 17543171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 34107624 - 34107554
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggg 152  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||    
T  34107624 tttttttttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggg 34107554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 3330166 - 3330243
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| |||||||||| |||| ||  || ||||||| |||||||||||| ||||||| | || |||||||||||||||    
T  3330166 tttttttttttgtcaaatagcttagtggttagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaa 3330243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 17376419 - 17376496
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| ||||||| |||||||||| ||| ||||||| |||||||||||  | ||||||| || ||| |||||||||||    
T  17376419 tttttttttttgttaagtagcctagcggttagagaaattcaccttaaaaataaataaatagggtgttcggggttcgaa 17376496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 5207222 - 5207142
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcc 162  Q
    ||||| |||||||||||||| |||  || || |||| |||| ||||||||||||||| | || |||| |||||||||||||    
T  5207222 tttttttttttgtcaagtagtctagtggctaaagaaattcatcttaaaggtgaataagtggggtgtctggggttcgaatcc 5207142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 33065222 - 33065310
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || ||| ||| ||||||| |||| |||||    
T  33065222 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtagggtgttcggagttcgaaccccgacccct 33065310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 1962948 - 1962866
Alignment:
Q  89 ttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||||||| ||  ||||||||| |||||||||| ||||||| | || ||||||| ||||||| | || |||||||    
T  1962948 ttttgtcaagtagcctagcgactagagaatt-caccttaaagatgaataagtggggtgtccggagttcgaacctcgacccctgc 1962866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 33613576 - 33613647
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||||||||||||| ||   | ||||||| |||| ||||||||||||||| | || |||||||||||||||    
T  33613576 tttttgtcaagtagcatagtagctagagaaattcaacttaaaggtgaataagtggggtgtccggggttcgaa 33613647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 42678295 - 42678366
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||||||||  |||  || ||||||| |||||||||||| ||||||| | || |||||||||||||||    
T  42678295 tttttgtcaagtaatctagtggttagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaa 42678366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 3037623 - 3037677
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  3037623 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 3037677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 7086347 - 7086293
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||| ||||||||||||||||||||||||    
T  7086347 ttcaccttataaggtgaataattggggtgttcggggttcgaatcccggcccctgc 7086293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 10745475 - 10745525
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataa 138  Q
    |||||||||| ||||||| ||| |||| || ||||||||||||||||||||    
T  10745475 tttttgtcaaatagcctagcggttagataaattcaccttaaaggtgaataa 10745525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 38413085 - 38413028
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaat 140  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| |||||||||    
T  38413085 tttttttttttgtcaagtagcctagtgg-tagagaaattcaccttaaagatgaataaat 38413028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 42998764 - 42998710
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaata 137  Q
    |||| |||| ||||||||||||| ||| ||||||| |||||||||||||| ||||    
T  42998764 tttttttttagtcaagtagcctagcggctagagaaattcaccttaaaggtaaata 42998710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 17154742 - 17154689
Alignment:
Q  120 tcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  17154742 tcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 17154689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 19905656 - 19905709
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctg 171  Q
    ||||||||| ||||||||||| |||| ||||||||||||||| |||| ||||||    
T  19905656 ttcaccttataaggtgaataagtcgggtgtccggggttcgaaccccgacccctg 19905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 580794 - 580838
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||| | || ||||||||||||||| ||||||||||||    
T  580794 aaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 580838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 8234793 - 8234845
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||    
T  8234793 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccct 8234845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 22297463 - 22297507
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||| || ||||||||||||||| ||| ||||||||    
T  22297463 aaggtgaataaatggggtgtccggggttcgaacccctgcccctgc 22297507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 43109203 - 43109319
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||| |||||||||  | ||||||||||||||| ||||||||||||  | |||||    
T  43109203 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataaatgaggtgtccggggttcgaaccccggcccctgcacatatttt 43109302  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  43109303 gcattatcccttaccaa 43109319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 24253608 - 24253745
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||||||||||||| ||| ||| ||||||| |||| |||||||| |||||| |  |||||| | ||||||||||||| ||||||| |||||| |    
T  24253608 tttttttttttgtcaagtagtctaacggttagagaaattcatcttaaaggcgaataagtaagatgtctgaggttcgaatcccgacccctgcataaattat 24253707  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| | |   |||||||||||||||| ||||||    
T  24253708 gcattatcccttatc---aagtgagctaagctcatggggac 24253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 19424170 - 19424086
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||||||||||| | || ||||||||||||||| |||| |||||||    
T  19424170 ttttggtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccccgacccctgc 19424086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 24134589 - 24134725
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||| ||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| |    
T  24134589 ttttttttttggtcaagcagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgt 24134688  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacgggga 221  Q
    | ||||||||| |||   || ||||||||||||| |||||    
T  24134689 gcattatcccttacc---aaatgagctaagctcatgggga 24134725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 29332403 - 29332328
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggccc 168  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||| | || |||||||||||| || ||||||||    
T  29332403 gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcaaaccccggccc 29332328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 14262687 - 14262796
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||||||||| |||| ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| |||| ||||||| || ||| ||    
T  14262687 ttttttttttgtcaaatagcttagtggctagagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacccctgcatatattgtg 14262786  T
Q  183 tattatccct 192  Q
     |||||||||    
T  14262787 cattatccct 14262796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 42946438 - 42946522
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| ||||||||||||| ||| ||||||| |||||||| ||||||||||| | || |||||||||||| || ||| ||||||||    
T  42946438 ttttggtcaagtagcctaacggctagagaaattcacctttaaggtgaataagtggggtgtccggggttcaaaccccagcccctgc 42946522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 50011637 - 50011500
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||||||||||||| | |   | ||||||| |||||||||||| ||||||| | ||||||| |||||||||| ||| ||||||||  | ||| |    
T  50011637 tttttttttttgtcaagtagtccagtagctagagaaattcaccttaaagatgaataagtgggatgtctggggttcgaaccccagcccctgcacatattgt 50011538  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| |||   || ||||||||||||| ||||||    
T  50011537 gcattatcccttacc---aaatgagctaagctcatggggac 50011500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 2350341 - 2350430
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| |||||||||||||||||| ||| || |||| ||||| |||||||||||||| | || ||| ||||||||||| ||| | ||||||    
T  2350341 ttttttttttgtcaagtagcctagcggctaaagaaattcactttaaaggtgaataagtggggtgttcggggttcgaaccccagtccctgc 2350430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 34702279 - 34702415
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||||||||||||| |||  || || |||| |||| ||||||| ||||||| |  | ||||||||||||||| ||||||||||||  | ||| ||    
T  34702279 ttttttttttgtcaagtagtctagtggctaaagaaattcatcttaaagatgaataagtgaggtgtccggggttcgaaccccggcccctgcacatattgtg 34702378  T
Q  183 tattatccctaaccaagaagtgagctaagctcacggggac 222  Q
     ||||||||| |||   || ||||||||||||| ||||||    
T  34702379 cattatcccttacc---aaatgagctaagctcatggggac 34702415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 35195577 - 35195666
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||||| ||| ||||||| || ||||||||||||||||| | |  ||| ||||||||||| || || ||||||    
T  35195577 ttttcttttggtcaagtagcctagcggctagagaaatttaccttaaaggtgaataagtggagtgtacggggttcgaaccctggtccctgc 35195666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 46532460 - 46532547
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccc 169  Q
    ||||| ||||||||||||||| || ||| ||||||| |||||||||||||||||  | | || |||| |  |||||||||||||||||    
T  46532460 tttttttttttgtcaagtagcttagcggttagagaaattcaccttaaaggtgaaatagtggggtgtctgaagttcgaatcccggcccc 46532547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 10123024 - 10123106
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || |||  |||||||||| |||| |||||    
T  10123024 tttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccct 10123106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 25031462 - 25031552
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||| |||||| ||||||  || ||||||| |||||||||||| ||||||| | || |||||||  |||||| ||||||||||||    
T  25031462 ttttttttttggtcaagcagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggaattcgaaccccggcccctgc 25031552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 40061567 - 40061485
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||||||||||||||||  || ||||||| | |||||||||| ||||||| | || ||||||| ||||||| ||| ||||||    
T  40061567 tttttgtcaagtagcctagtggctagagaaatccaccttaaagatgaataagtggggtgtccggagttcgaaccccagcccct 40061485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 44583711 - 44583629
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    |||||| ||| ||||||||||| ||||||| |||||||||||||||||||  | |  ||||||| ||||||| |||| |||||    
T  44583711 tttttgacaaatagcctatcggctagagaaattcaccttaaaggtgaataggtggagtgtccggagttcgaaccccgacccct 44583629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 48497184 - 48497294
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| || ||||||||| ||||||||| |  |||||||| ||||||  |||||||||||  | ||| || ||||    
T  48497184 ttttggtcaagtagcctagtggctagagaaatttaccttaaagatgaataaatggagtgtccgggattcgaactccggcccctgcacatattgtgcatta 48497283  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  48497284 tcccttaccaa 48497294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 52833103 - 52833161
Alignment:
Q  114 agaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| ||||| || || |||||||||| |||||||||||||||||| ||||||||||||    
T  52833103 agaaattcacttttaaagtgaataaatgggatgtccggggttcgaaccccggcccctgc 52833161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 22779352 - 22779216
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| ||||| |||||||| |||| || ||||||| ||||  |||||||||||||| | || |||  |||||||||| |||| | ||||  |||| | ||    
T  22779352 ttttttttttatcaagtagtctattggctagagaaattcattttaaaggtgaataagtggggtgtttggggttcgaaccccgactcctgtataaaatatg 22779253  T
Q  183 tattatccctaaccaagaagtgagctaagctcacggggac 222  Q
     ||||||||| |||   |||||||||||||||||| ||||    
T  22779252 cattatcccttacc---aagtgagctaagctcacgaggac 22779216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 30735958 - 30735842
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||||||||||||||  || ||||||| ||||||||  || ||||||| |  | ||||| |||||| ||  |||||||||||  ||||| |    
T  30735958 tttttttttttgtcaagtagcctagtggttagagaaattcacctttgagatgaataagtgtggtgtccagggttcaaactccggcccctgcacaaattgt 30735859  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  30735858 gcattatcccttaccaa 30735842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 49620096 - 49619965
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| ||||| |||||| ||||||| | || ||||||||||  ||| |||| |||||||  | ||| || ||||    
T  49620096 ttttggtcaagtagcctagtggctagagaaattcactttaaagatgaataagtggggtgtccggggtctgaaccccgacccctgcacatattgtgcatta 49619997  T
Q  188 tccctaaccaagaagtgagctaagctcacggggac 222  Q
    ||||| |||   || ||||||||||||| ||||||    
T  49619996 tcccttacc---aaatgagctaagctcatggggac 49619965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 10790458 - 10790532
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttc 156  Q
    ||||| |||| || |||||||||| ||| || |||| |||||||||||||| ||||| | || ||||||||||||    
T  10790458 ttttttttttggttaagtagcctaacggctacagaaattcaccttaaaggtaaataagtagggtgtccggggttc 10790532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 12973249 - 12973359
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||| |||  || || |||| || ||||||||| ||||||| | || |||| || ||| ||||| |||||||||| || ||| || ||||    
T  12973249 tttttgtcaagtagtctagtggctaaagaaatttaccttaaagatgaataagtggggtgtcaggagtttgaatctcggcccctgcatatattgtgcatta 12973348  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  12973349 tcccttaccaa 12973359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 19793620 - 19793566
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || |||||||||||||||| |||||||||||    
T  19793620 ttcaccttataaggtgaataagtggggtgtccggggttcgaattccggcccctgc 19793566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 27054820 - 27054770
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataa 138  Q
    ||||||||||||||||||  || ||||||| |||||||||||| |||||||    
T  27054820 tttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataa 27054770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 3347669 - 3347750
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccg 164  Q
    |||| ||||||||||| ||||||  |  ||||||| |||||||||||| ||||||| | || ||| ||||||||||| ||||    
T  3347669 ttttttttttgtcaagcagcctagtgactagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccg 3347750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 16985900 - 16985977
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| |||| |||||||| ||||  || ||||||| |||||||||||| ||||||| |  | |||||||||||||||    
T  16985900 ttttttttttggtcaagtaacctagtggctagagaaattcaccttaaagatgaataagttaggtgtccggggttcgaa 16985977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 23368697 - 23368774
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| |||||||||||||| |||  || |||| || |||||||| || |||||||| | || |||||||||||||||    
T  23368697 tttttttttttgtcaagtagactagtggctagataaattcacctttaatgtgaataagtggggtgtccggggttcgaa 23368774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 25800296 - 25800408
Alignment:
Q  82 tttttcttttt--gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatt 179  Q
    |||||||||||  |||||||||| ||  || || |||| |||||||| ||| ||||||| | || ||||||||||| ||| ||||| |||| | ||||||    
T  25800296 tttttcttttttggtcaagtagcttaatggttaaagaaattcacctttaagatgaataagtggggtgtccggggttggaaccccggaccctacataaatt 25800395  T
Q  180 ttgtattatccct 192  Q
     || |||||||||    
T  25800396 gtgcattatccct 25800408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 47652001 - 47651886
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||||||||||||||| |  || ||||||| |||||||||||  ||||||| | |||||||  || |||||| ||| ||||||||  | ||| |    
T  47652001 tttttttttttgtcaagtagcccagtggctagagaaattcaccttaaa-atgaataagtgggatgtctaggattcgaaccccagcccctgcacatattgt 47651903  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  47651902 gcattatcccttaccaa 47651886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 50199487 - 50199531
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||| | || ||||||||||||||| ||||||||||||    
T  50199487 aaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 50199531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 38503223 - 38503359
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||| ||||||||| |||| || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| ||    
T  38503223 tttttttttggtcaagtagtctattggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtg 38503322  T
Q  183 tattatccctaaccaagaagtgagctaagctcacggggac 222  Q
     ||||||||| |||   || ||||||||||||| ||||||    
T  38503323 cattatcccttacc---aaatgagctaagctcatggggac 38503359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 15680865 - 15680944
Alignment:
Q  81 gtttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaat 160  Q
    |||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||| | || |||||| |||||||||    
T  15680865 gtttttttttttgtcaagtagcctagcggttagagaaattcaccttaaaggtgaataagtggggtgtccgaggttcgaat 15680944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 4395816 - 4395906
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||||||||| |||||||| || ||||||| |||||||||||| ||||||||| || |||| ||||||||||  |||||||||||    
T  4395816 tttttttttttgtcaaatagcctattggctagagaaattcaccttaaagatgaataaatggggtgtcaggggttcgaactccggcccctgc 4395906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 3294207 - 3294103
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||| ||| ||  || |||| |||||||||||| ||||||||| || |||||||  |||||| |||||||||||| |||||| || ||||    
T  3294207 tttttgtcaagtagtctagcgactatagaaattcaccttaaagatgaataaatgggttgtccggaattcgaaccccggcccctgcataaattatgcatta 3294108  T
Q  188 tccct 192  Q
    |||||    
T  3294107 tccct 3294103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 17077491 - 17077375
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| || |||||||||||||||  || |||| || |||||||| ||| ||||||| | || |||||||||||||||||||| |||||||  ||||| |    
T  17077491 ttttttttgttgtcaagtagcctagtggctagataaattcacctttaagatgaataagtggggtgtccggggttcgaatcccgacccctgcacaaattgt 17077392  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  17077391 gcattatcccttaccaa 17077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 31250276 - 31250141
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||| |||||| ||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| ||    
T  31250276 tttttttttggtcaagcagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtg 31250177  T
Q  183 tattatccctaaccaagaagtgagctaagctcacgggga 221  Q
     ||||||||| |||   || ||||||||||||| |||||    
T  31250176 cattatcccttacc---aaatgagctaagctcatgggga 31250141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 34729600 - 34729463
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| ||||||||||||||   | ||| ||||||| |||||||||||||||||||| | || ||||| ||||||||| |||| ||||||| || | | ||    
T  34729600 ttttttttttgtcaagtagttaagcggttagagaaattcaccttaaaggtgaataagtggggtgtcc-gggttcgaaccccgacccctgcatataatatg 34729502  T
Q  183 tattatccctaaccaagaagtgagctaagctcacggggac 222  Q
     ||||||||| ||||||  | ||||||||||||| |||||    
T  34729501 cattatcccttaccaag-tgagagctaagctcacagggac 34729463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 43227967 - 43227880
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaa 198  Q
    ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| || ||||||||| |||||    
T  43227967 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaa 43227880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 9628235 - 9628165
Alignment:
Q  94 tcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccg 164  Q
    |||||||||||||||  || ||||||||||||||||||||||||||| || |||| | |||||||| ||||    
T  9628235 tcaagtagcctatcgactaaagaatttcaccttaaaggtgaataaatagggtgtctgaggttcgaaccccg 9628165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 12256474 - 12256524
Alignment:
Q  95 caagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggat 145  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||| ||||    
T  12256474 caagtagcctagcggctagagaaattcaccttaaaggtgaataaataggat 12256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 15470592 - 15470702
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||||||||||  ||  || ||||||| |||||||||||| ||||||||| || |||| |||||||||||| | |||| |||  | ||| || ||||    
T  15470592 tttttgtcaagtagtttagtggctagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaatctcagcccttgcacatattgtgcatta 15470691  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  15470692 tcccttaccaa 15470702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 20191571 - 20191481
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||||||||||||| |||  ||  |||||| || ||||||||||||||||| | |  ||||||||||||||| |||| |||||||    
T  20191571 tttttttttttgtcaagtagtctagtggccagagaaatttaccttaaaggtgaataagtggagtgtccggggttcgaaccccgacccctgc 20191481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 1572240 - 1572150
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| ||||| |||||||| |||  || ||||||| |||||||| ||| ||||||| | ||  |||||||||||||| ||| ||||||||    
T  1572240 tttttttttttatcaagtagtctagtggctagagaaattcacctttaagatgaataagtggggagtccggggttcgaaccccagcccctgc 1572150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 8015929 - 8015875
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  8015929 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 8015875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 42209045 - 42208960
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggccc 168  Q
    |||| ||||||||||||||||||  |  ||||||| |||||||||||| ||||||| |  | ||||||| ||||||| | ||||||    
T  42209045 ttttttttttgtcaagtagcctagtgactagagaaattcaccttaaagatgaataagtgaggtgtccggagttcgaacctcggccc 42208960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 5039804 - 5039724
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggccc 168  Q
    |||||||||||||| |||  || ||||||| || ||||||||| ||||||| | || ||||||  ||||||| ||||||||    
T  5039804 tttttgtcaagtagtctagtggctagagaaatttaccttaaagatgaataagtggggtgtccgaagttcgaaccccggccc 5039724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 31154098 - 31154193
Alignment:
Q  96 aagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccct 192  Q
    |||||||||| ||| |||| |||  ||||||||| || ||||| | || |||  |||||||||||||| |||||| | |||||| ||||||||||||    
T  31154098 aagtagcctagcggctagaaaatg-caccttaaaagtaaataactggggtgtttggggttcgaatcccagccccttcataaattatgtattatccct 31154193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 35168634 - 35168674
Alignment:
Q  119 ttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||||||||||||||| | || |||||||||||||||    
T  35168634 ttcaccttaaaggtgaataagtggggtgtccggggttcgaa 35168674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 38690796 - 38690660
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| || |||||||||| ||| ||||||| ||||||||||||| |||||| | || ||||||||||||||| |||| ||||||| || | | |    
T  38690796 ttttttttttggttaagtagcctagcggctagagaaattcaccttaaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataatat 38690697  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacgggga 221  Q
    | ||||||||| |||   |||||||||||||||| |||||    
T  38690696 gcattatcccttacc---aagtgagctaagctcatgggga 38690660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 11491190 - 11491294
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || |||||||||||||||  |||||||||||  ||||| || ||||    
T  11491190 ttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccggcccctgcacaaattatgcatta 11491289  T
Q  188 tccct 192  Q
    |||||    
T  11491290 tccct 11491294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 16556581 - 16556465
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || ||| ||||||||||| |||| |||||||  | ||| |    
T  16556581 tttttttttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgacccctgcacatattgt 16556482  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  16556481 gcattatcccttaccaa 16556465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 44251292 - 44251387
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaa 177  Q
    ||||| |||||||||| ||||||| ||| |||| || |||||||||||| ||||||||| || |||||||| |||||| |||| ||||||| ||||    
T  44251292 tttttttttttgtcaaatagcctagcggctagaaaaattcaccttaaagatgaataaatggggtgtccgggattcgaaccccgacccctgcataaa 44251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 37574402 - 37574312
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||||||||||| | || || |||||||| ||| ||||||||||||    
T  37574402 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaaggtgaataagtggggtgcccggggtttgaaccccggcccctgc 37574312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 51974877 - 51974740
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||||||||||  || |||| || |||||||||||| | ||||| | ||||||||| ||||||||||||| |||||||  | ||| |    
T  51974877 ttttttttttggtcaagtagcctagtggctagataaattcaccttaaagataaataagtgggatgtccgaggttcgaatcccgacccctgcacatattgt 51974778  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| |||   || ||||||||||||| ||||||    
T  51974777 gcattatcccttacc---aaatgagctaagctcatggggac 51974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 2766723 - 2766840
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||||||||||||||||| ||| | ||||| |||||||||||||||||  | |  | || | ||||||||||||||||||||||| || ||  |    
T  2766723 tttttttttttgtcaagtagcctagcggctggagaaattcaccttaaaggtgaaatagtgaggtgcctggggttcgaatcccggcccctgcatacataat 2766822  T
Q  182 gtattatccctaaccaag 199  Q
    | ||||||||| ||||||    
T  2766823 gcattatcccttaccaag 2766840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 29889743 - 29889833
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| ||||||| |||||||||| ||| ||||||| ||||||||||| |||||||||| ||   ||||  ||||||| ||||||||||||    
T  29889743 tttttttttttgttaagtagcctagcggctagagaaattcaccttaaatgtgaataaatggggcatccgaagttcgaaccccggcccctgc 29889833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 40406925 - 40407062
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa-tcccggcccctgcttaaattt 180  Q
    ||||| |||| |||||| ||||||  || ||||||| |||||||||||| ||||||| | || |||||||||||||||  ||||||||||||  | |||     
T  40406925 ttttttttttggtcaagcagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaacccccggcccctgcacatattg 40407024  T
Q  181 tgtattatccctaaccaagaagtgagctaagctcacgggga 221  Q
    || ||||||||| |||   || ||||||||||||| |||||    
T  40407025 tgcattatcccttacc---aaatgagctaagctcatgggga 40407062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 45355689 - 45355770
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| |||| |||||    
T  45355689 tttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagt-gggtgtccggggttcgaaccccgacccct 45355770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 45369430 - 45369511
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||| |||| |||||    
T  45369430 tttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagt-gggtgtccggggttcgaaccccgacccct 45369511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 50815831 - 50815729
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| |||||||| ||| ||||||  | || ||||||||||||||| ||||||||||||  ||||| || ||||    
T  50815831 ttttggtcaagtagcctagtggctagagaaattcacctttaagatgaatatgtggggtgtccggggttcgaaccccggcccctgcacaaattgtgcatta 50815732  T
Q  188 tcc 190  Q
    |||    
T  50815731 tcc 50815729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 56555678 - 56555588
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||| |||| |||||||| ||| ||||||| |||||||||||||||||||| | || ||| || |||||||| |||| |||||||    
T  56555678 ttttttttttggtcaggtagcctaacggctagagaaattcaccttaaaggtgaataagtggggtgttcgaggttcgaaccccgacccctgc 56555588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 37889572 - 37889661
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| ||||| ||||||||||||  || ||||||| ||||||||||| |||||||| |  | ||||||||||||||| |||| |||||||    
T  37889572 ttttttttttatcaagtagcctagtggctagagaaattcaccttaaaagtgaataagtgaggtgtccggggttcgaaccccgacccctgc 37889661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 46283252 - 46283136
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| ||||||||| |||  |  ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||| ||||  | ||| |    
T  46283252 ttttttttttggtcaagtagtctagtgactagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggccgctgcacatattgt 46283153  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  46283152 gcattatcccttaccaa 46283136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 49811373 - 49811429
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataa 138  Q
    ||||| |||||||||||||||||| ||| ||||||| |||| |||||||||||||||    
T  49811373 tttttttttttgtcaagtagcctagcggctagagaaattcatcttaaaggtgaataa 49811429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 36993171 - 36993097
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttc 156  Q
    ||||| ||||||||| ||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||||    
T  36993171 tttttttttttgtcaggtagcctagtggctagagaaattcaccttaaagatgaataattggggtgtccggggttc 36993097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 48404102 - 48404184
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccg 164  Q
    ||||| ||||||||||||||||||  || || |||| |||||||||||| ||||||| |  | ||||||||||||||| ||||    
T  48404102 tttttttttttgtcaagtagcctagtggctaaagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccg 48404184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 49607673 - 49607607
Alignment:
Q  89 ttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggtt 155  Q
    |||||| |||||| ||||||| ||||||| |||||||||||||||||||| | || |||| ||||||    
T  49607673 ttttgtaaagtagtctatcggctagagaaattcaccttaaaggtgaataagtggggtgtctggggtt 49607607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 26885371 - 26885452
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccc 169  Q
    ||||||||||||||||||  || ||||||| | |||||||||| | ||||| | |  ||||||||||||||| |||||||||    
T  26885371 tttttgtcaagtagcctagtggctagagaaatccaccttaaagataaataagtggagtgtccggggttcgaaccccggcccc 26885452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 35305106 - 35305033
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaa-tcggatgtccggggttcgaat 160  Q
    |||||||||||||||||| ||| |||||||  |||||||||| ||||||||| | ||  |||||||||||||||    
T  35305106 tttttgtcaagtagcctagcggctagagaaaatcaccttaaaagtgaataaattggggagtccggggttcgaat 35305033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 13539811 - 13539936
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||||||| |||  |||||| |||||||| |||||||||||||  | |||  |||||||||| ||  | |||||| |||| | || ||||    
T  13539811 tttttgtcaagtagcctagcggccagagaaattcacctt-aaggtgaataaatgaggtgtttggggttcgaaccctagtccctgcataaa-tatgcatta 13539908  T
Q  188 tccctaaccaagaagtgagctaagctcacgg 218  Q
    ||||| |||   |||||||||||||||||||    
T  13539909 tcccttacc---aagtgagctaagctcacgg 13539936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 56360691 - 56360635
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataa 138  Q
    |||||||||||||||| ||| ||| | | ||||||| ||||||||||||||||||||    
T  56360691 tttttctttttgtcaaatagtctaacagttagagaaattcaccttaaaggtgaataa 56360635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 22478741 - 22478792
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccc 169  Q
    ||||||||| ||||||||||||| || ||||||||||||||||| |||||||    
T  22478741 ttcaccttataaggtgaataaatggggtgtccggggttcgaatcacggcccc 22478792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 42154695 - 42154580
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttg 182  Q
    |||| |||||||||||||||| | ||| ||||||| |||||||||||| ||| ||| |    ||||||||||||||| |||| || ||||  | ||| ||    
T  42154695 ttttttttttgtcaagtagcccagcggctagagaaattcaccttaaagatgattaagtgaagtgtccggggttcgaaccccgacctctgcacatattgtg 42154596  T
Q  183 tattatccctaaccaa 198  Q
     ||||||||| |||||    
T  42154595 aattatcccttaccaa 42154580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 37032180 - 37032234
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || |||||||||||||||||||| |||||||    
T  37032180 ttcaccttataaggtgaataagtggggtgtccggggttcgaatcccgacccctgc 37032234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 43362165 - 43362243
Alignment:
Q  114 agaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccct 192  Q
    |||| |||||||||||| ||||||| | || ||||||||||||||| |||| ||||||  || ||| || |||||||||    
T  43362165 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgaatatattgtgcattatccct 43362243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 45847891 - 45847973
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccg 164  Q
    ||||| |||| |||||| ||||||  || || |||| |||||||||||| ||||||| | || ||||||||||||||| ||||    
T  45847891 ttttttttttggtcaagcagcctaggggctaaagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccg 45847973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 47017947 - 47018001
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  47017947 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 47018001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 6930642 - 6930573
Alignment:
Q  124 cttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatcccta 193  Q
    ||||||||||||||| | || ||||||| ||| |||||||||||||||| || ||| || | ||||||||    
T  6930642 cttaaaggtgaataagtggggtgtccggagtttgaatcccggcccctgcatatattatgcaatatcccta 6930573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 22341827 - 22341880
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaa 135  Q
    ||||| |||||||||||||||||| ||| ||||||| |||||||| ||| ||||    
T  22341827 tttttttttttgtcaagtagcctagcggttagagaaattcacctttaagatgaa 22341880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 32037697 - 32037580
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||| || |||  || ||| ||||||| ||||| ||||| |||||||||| |||| ||| || || ||| |||| ||||||| || | | |    
T  32037697 tttttttttttgtaaaatagtttagcggctagagaaattcactttaaatgtgaataaatgggatatccaggatttgaaccccgacccctgcatataatat 32037598  T
Q  182 gtattatccctaaccaag 199  Q
    | ||||||||||||||||    
T  32037597 gcattatccctaaccaag 32037580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 1589172 - 1589212
Alignment:
Q  132 tgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  1589172 tgaataaatgggatgtccggggttcgaatcctgacccctgc 1589212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 10098205 - 10098165
Alignment:
Q  132 tgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||| | || ||||||||||||||||||||||||||||    
T  10098205 tgaataagtggggtgtccggggttcgaatcccggcccctgc 10098165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 20610823 - 20610779
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||| | |||||||||| ||||||| ||||||||||||    
T  20610823 aaggtgaataagtgggatgtccggagttcgaaccccggcccctgc 20610779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 22525517 - 22525441
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||| |||||||||| ||| | | ||| ||||||| |||| ||||||||||||||| | || |||||||| ||||||    
T  22525517 ttttttttttgtcaaatagtccagcggttagagaaattcatcttaaaggtgaataagtggggtgtccgggattcgaa 22525441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 29430621 - 29430545
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccg 164  Q
    ||||| ||||||||  ||| || |||| || |||||||||||| ||||||| | || ||||||||||||||| ||||    
T  29430621 tttttttcaagtagtttattggctagataaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccg 29430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 31601890 - 31601846
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||| | || ||||||||||||||||| ||||||||||    
T  31601890 aaggtgaataagtggggtgtccggggttcgaatctcggcccctgc 31601846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 43115352 - 43115308
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||| || ||||||||||||||||| || |||||||    
T  43115352 aaggtgaataaatggggtgtccggggttcgaatctcgacccctgc 43115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 15025286 - 15025170
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||| |||||||||||| ||| ||||||| |||||||||||||||||||| | || ||| ||||||| ||| |||||||||||  |||| | |    
T  15025286 tttttttttttatcaagtagcctagcgggtagagaaattcaccttaaaggtgaataagtggggtgttcggggtttgaaccccggcccctgtataaaatat 15025187  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  15025186 gcattatcccttaccaa 15025170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 48433675 - 48433812
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||||||||| ||| ||||||||||||  | ||| |    
T  48433675 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggtttgaaccccggcccctgcacatattgt 48433774  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| |||   || ||||||||||||| ||||||    
T  48433775 gcattatcccttacc---aaatgagctaagctcatggggac 48433812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 5228194 - 5228105
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaa 177  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||||||||||| | || ||||| || |||||| |||||||||||| ||||    
T  5228194 ttttggtcaagtagcctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccaggattcgaaccccggcccctgcataaa 5228105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 40273922 - 40273814
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagctaa 210  Q
    ||||||| |||||||||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| || ||||||||| |||   || ||||||||    
T  40273922 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttacc---aaatgagctaa 40273826  T
Q  211 gctcacggggac 222  Q
    ||||| ||||||    
T  40273825 gctcatggggac 40273814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 48258149 - 48258226
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||| ||||||||| |||||||| ||| |||| || ||||| |||||||||||||||| || |||||||||||||||    
T  48258149 tttttttttttgtcaggtagcctagcggctagacaaattcactttaaaggtgaataaatggggtgtccggggttcgaa 48258226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 26606074 - 26606162
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||| | |  ||||| |||||| || ||||||||||    
T  26606074 tttttttttttgtcaagtagccaagcggctagagaaattcaccttaaaggtgaataagtggagtgtccagggttcaaaccccggcccct 26606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 28914842 - 28914929
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccc 169  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||| || |||||||| | || ||||||||||||||| |||||||||    
T  28914842 ttttttttttggtcaagtagcctagtggctagagaaattcacctttaaagtgaataagtggggtgtccggggttcgaaccccggcccc 28914929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 4956063 - 4956173
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || ||||| ||||||||| |||| |||||||  | ||| || ||||    
T  4956063 ttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgacccctgcacatattgtgcatta 4956162  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  4956163 tcccttaccaa 4956173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 10091422 - 10091512
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||||||||| |||| ||  || ||||||| |||||||||||||||||||| | || ||||  ||||||||| ||||||||||||    
T  10091422 tttttttttttgtcaaatagcgtagtggctagagaaattcaccttaaaggtgaataagttgggtgtctagggttcgaaccccggcccctgc 10091512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 38378343 - 38378233
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||||||||||| ||  || ||||||| |||||||||||  ||||||| | || |||||||||||| || ||||||||||||  | ||| || ||||    
T  38378343 tttttgtcaagtagcttagtgggtagagaaattcaccttaaaaatgaataagtggggtgtccggggttcaaaccccggcccctgcacatattgtgcatta 38378244  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  38378243 tcccttaccaa 38378233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 24030114 - 24030027
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||| |||| ||||||||| |||  || ||||||| |||||||||||| ||||||||| || |||| |||||||||| ||||||||||    
T  24030114 ttttttttttggtcaagtagtctag-ggctagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaaccccggcccct 24030027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 44662446 - 44662565
Alignment:
Q  100 agcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaag 199  Q
    |||||| ||| | ||||| |||||||||||||||||  | | || ||||||||||||||| |||||||||||| || ||  || ||||||||| |||       
T  44662446 agcctagcggctggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgcattatcccttacc--- 44662542  T
Q  200 aagtgagctaagctcacggggac 222  Q
     |||||||||||||||| |||||    
T  44662543 tagtgagctaagctcacagggac 44662565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 12166183 - 12166096
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaa 198  Q
    ||||||| |||||||||||| ||||||| | || |||| |||||||||| ||| ||||||||  ||||| || ||||||||| |||||    
T  12166183 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttaccaa 12166096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 13295341 - 13295428
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    |||| |||||||||||||||||| ||| | ||||| |||||||||||||||||  |||  ||| |||| |||||||| |||| |||||    
T  13295341 ttttttttttgtcaagtagcctagcggctggagaaattcaccttaaaggtgaaataatgagatatccgaggttcgaaccccgacccct 13295428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 20530025 - 20529955
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccgggg 153  Q
    |||| |||||||||||||||| | ||  ||||||| |||||||||||||||||||| | || |||||||||    
T  20530025 ttttatttttgtcaagtagcccaacgactagagaaattcaccttaaaggtgaataagtggggtgtccgggg 20529955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 46570000 - 46570073
Alignment:
Q  146 gtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    |||||||||||||| |||||||||||| |||| | || ||||||||| | |   |||||||||||||||||||||||    
T  46570000 gtccggggttcgaaccccggcccctgcataaactatgcattatcccttatc---aagtgagctaagctcacggggac 46570073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 3961384 - 3961481
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatcc 190  Q
    |||||||||||||   | ||||||| |||||||| ||  ||||||| | |||||||||||||||||| ||||||| ||||  ||||| || |||||||    
T  3961384 gtcaagtagcctagtagctagagaaattcacctttaaaatgaataagtgggatgtccggggttcgaaccccggcctctgcacaaattgtgcattatcc 3961481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 20013710 - 20013621
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| |||||||||| || |||| ||| ||||||| |||| |||||||||| |||| | ||||||||||| ||||||   ||||||||||    
T  20013710 ttttttttttgtcaaataacctagcggctagagaaattcatcttaaaggtggataagtgggatgtccgggattcgaacttcggcccctgc 20013621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 6548683 - 6548763
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggccc 168  Q
    |||||||||||||||||| |||   ||||| |||||||||||||||||  | | || ||||||| ||||||| ||||||||    
T  6548683 tttttgtcaagtagcctagcggccggagaaattcaccttaaaggtgaaatagtggggtgtccggagttcgaaccccggccc 6548763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 9668787 - 9668912
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||||||| |||  |||||| |||||||| |||||||||||||  | |||  |||||||||| ||  | |||||| |||| | || ||||    
T  9668787 tttttgtcaagtagcctagcggccagagaaattcacctt-aaggtgaataaatgaggtgtttggggttcgaaccctagtccctgcataaa-tatgcatta 9668884  T
Q  188 tccctaaccaagaagtgagctaagctcacgg 218  Q
    ||||| |||   |||||||||||||||||||    
T  9668885 tcccttacc---aagtgagctaagctcacgg 9668912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 40011836 - 40011732
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||| | |||  |||||||||| ||||| ||||| || ||||| | |||||| ||||||||||| | || ||||||| || | | |||||||    
T  40011836 tttttgtcaagtggtctaagggatagagaaattcactttaaaagtaaataagtgggatgttcggggttcgaacctcgacccctgcatataatatgtatta 40011737  T
Q  188 tccct 192  Q
    |||||    
T  40011736 tccct 40011732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 14707411 - 14707332
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||| ||| ||||||| |||||  ||||||||||||| | || ||||||||||||||| |||  |||||||    
T  14707411 gtcaagtagtctaacggctagagaaattcactataaaggtgaataagtggggtgtccggggttcgaaccccaacccctgc 14707332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 31793587 - 31793508
Alignment:
Q  93 gtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||||||| ||||  || ||||||| | |||||||||| ||||||| | || ||||||||||||||| |||| |||||||    
T  31793587 gtcaagtaacctagtggctagagaaatccaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgc 31793508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 33248799 - 33248905
Alignment:
Q  114 agaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagctaagct 213  Q
    |||| |||||||||||| ||||||| | || ||||||||||||||| |||| || |||| || ||| || || |||||| |||   || |||||||||||    
T  33248799 agaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacctctgcatatattgtgcatcatcccttacc---aaatgagctaagct 33248895  T
Q  214 cacggggacc 223  Q
    || |||||||    
T  33248896 catggggacc 33248905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 37665842 - 37665736
Alignment:
Q  114 agaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagctaagct 213  Q
    |||| ||||||||||||| |||||| | || ||||||||||| ||| |||||||||||| || | | ||| |||||| | |||   || |||| ||||||    
T  37665842 agaaattcaccttaaaggcgaataagtggggtgtccggggtttgaaccccggcccctgcatataatatgttttatcctttacc---aaatgagttaagct 37665746  T
Q  214 cacggggacc 223  Q
    ||||||||||    
T  37665745 cacggggacc 37665736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 21285354 - 21285408
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  21285354 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 21285408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 23824557 - 23824693
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||| ||||||| ||||  || ||||||| |||||||||||| ||||||| | || ||||| ||||||||| | |||||| |||  | ||| |    
T  23824557 tttttttttttatcaagtaacctagtggctagagaaattcaccttaaagatgaataagtagggtgtcc-gggttcgaacctcggcccatgcacatattgt 23824655  T
Q  182 gtattatccctaaccaagaagtgagctaagctcacggggac 222  Q
    | ||||||||| |||   || ||||||||||||| ||||||    
T  23824656 gcattatcccttacc---aaatgagctaagctcatggggac 23824693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 29658273 - 29658327
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  29658273 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 29658327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 3889771 - 3889852
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccc 169  Q
    |||| |||||||| ||||  || ||||||| |||||||| ||| ||||||| | || ||||||||||||||| || ||||||    
T  3889771 ttttggtcaagtaacctaatggttagagaaattcacctttaagatgaataagtggggtgtccggggttcgaaccctggcccc 3889852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 27454142 - 27454025
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcacc-ttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattt 180  Q
    ||||| |||| |||||||||||||  || ||||||| |||||| || ||| ||||||| | || |||||| |||||||| | || |||||||  |||||     
T  27454142 ttttttttttggtcaagtagcctagtggctagagaaattcaccttttaagatgaataagtggggtgtccgaggttcgaacctcgacccctgcacaaattg 27454043  T
Q  181 tgtattatccctaaccaa 198  Q
    || ||||||||| |||||    
T  27454042 tgcattatcccttaccaa 27454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 46196047 - 46195958
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    |||| ||||||||||| || ||| ||| | ||||| |||||||||||||||||  | | || |||||||||||| || |||| |||||||    
T  46196047 ttttttttttgtcaagcagactagcggctggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcaaaccccgacccctgc 46195958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 27047726 - 27047770
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||| || |||||| |||||||| ||||||||||||    
T  27047726 aaggtgaataaatggggtgtccgaggttcgaaccccggcccctgc 27047770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 35195927 - 35195883
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||||| || ||| ||||||||||| ||||||||||||    
T  35195927 aaggtgaataaatggggtgttcggggttcgaaccccggcccctgc 35195883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 36977235 - 36977283
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||||||  ||||||||||||||||||||| || |||||| ||||||||    
T  36977235 tagagaaactcaccttaaaggtgaataaatagggtgtccgaggttcgaa 36977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 4259989 - 4259873
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| ||||||| | ||  |||||||||| ||| ||||||||||||  | ||| |    
T  4259989 tttttttttttgtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggagtccggggttggaaccccggcccctgcacatattgt 4259890  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  4259889 gcattatcccttaccaa 4259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 19957300 - 19957423
Alignment:
Q  96 aagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaac 195  Q
    |||||||||| | | ||||||| |||||||||||||||||||| | || ||||||||||||||| | || ||||||| || | | || ||||||||| ||    
T  19957300 aagtagcctagctgctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaacctcgtcccctgcatataatatgcattatcccttac 19957399  T
Q  196 caagaagtgagctaagctcacggggac 222  Q
    |   |||||||||||| |||| |||||    
T  19957400 c---aagtgagctaagttcacagggac 19957423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 10201386 - 10201304
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    ||||| ||||||||| || ||| ||||||| ||||| ||||||||||||||||  | ||||||||||||||| |||| |||||    
T  10201386 tttttatcaagtagcttaacggctagagaaattcactttaaaggtgaataaatgaggtgtccggggttcgaaccccgacccct 10201304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 17855779 - 17855689
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||| |||||||| |||| ||| |||| || ||||| ||||| |||||||| | || ||||||||||||||| ||||||||||||    
T  17855779 ttttttttttggtcaagtaacctagcggctagaaaaattcactttaaatgtgaataagtggggtgtccggggttcgaaccccggcccctgc 17855689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 39104737 - 39104621
Alignment:
Q  81 gtttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattt 180  Q
    |||||| |||||||||||||| |||  || ||||||| | |||||||||| ||||||| | || ||||||||||||||| ||||||| ||||  | |||     
T  39104737 gtttttttttttgtcaagtagtctagtggctagagaaatccaccttaaagatgaataagt-gggtgtccggggttcgaaccccggccgctgcacatattg 39104639  T
Q  181 tgtattatccctaaccaa 198  Q
    || ||||||||| |||||    
T  39104638 tgcattatcccttaccaa 39104621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 41454821 - 41454929
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagctaa 210  Q
    ||||||| ||||| |||||| ||||||| | || ||||||||||||||| ||||||||||||  | ||| || ||||||||| |||   || ||||||||    
T  41454821 tagagaaattcacattaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttacc---aaatgagctaa 41454917  T
Q  211 gctcacggggac 222  Q
    ||||| ||||||    
T  41454918 gctcatggggac 41454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 22652807 - 22652703
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||||||||||| ||  || ||||||| |||||||| ||  ||||||| | || |||||||||||||||  |||||||||||  ||||| || ||||    
T  22652807 tttttgtcaagtagcttagtggctagagaaattcacctttaacatgaataattggggtgtccggggttcgaacaccggcccctgcacaaattatgcatta 22652708  T
Q  188 tccct 192  Q
    |||||    
T  22652707 tccct 22652703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 39172179 - 39172255
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    |||| ||||||||||||||||||  || || |||| ||||| |||||||||||||||| || |||||||| ||||||    
T  39172179 ttttttttttgtcaagtagcctaggggctaaagaaattcactttaaaggtgaataaatggggtgtccgggattcgaa 39172255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 8145902 - 8145847
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataa 138  Q
    |||| ||||||||||||||| || ||| ||||||| ||||||||||||||||||||    
T  8145902 ttttttttttgtcaagtagcgtagcggttagagaaattcaccttaaaggtgaataa 8145847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 31153615 - 31153524
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcgga-tgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||||||||||||| |||   | ||||||| | |||||||||| ||||||||| ||  |||||| |||||||||||||||||||||    
T  31153615 tttttttttttgtcaagtagtctagtagctagagaaatccaccttaaagatgaataaatgggggtgtccgaggttcgaatcccggcccctgc 31153524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 5904339 - 5904429
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| |||||||||| |||| ||   | ||||||| |||| ||||||| ||||||| | |||||||||||||||||| |||| |||||||    
T  5904339 tttttttttttgtcaaatagcttagtagctagagaaattcatcttaaagatgaataagtgggatgtccggggttcgaaccccgtcccctgc 5904429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 19733040 - 19733150
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    ||||||||||||||| ||  || ||||||| |||||||||||| ||||||| |  | ||| |||| |||||| |||| ||||||| || ||| || ||||    
T  19733040 tttttgtcaagtagcttagtggttagagaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgacccctgcatatattatgcatta 19733139  T
Q  188 tccctaaccaa 198  Q
    ||||| |||||    
T  19733140 tcccttaccaa 19733150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 43413851 - 43413961
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| |||| |||||||||||||  || ||||||| |||||||||||| ||||||| | || |||  ||| |||||| ||| ||||||||  ||||| |    
T  43413851 ttttttttttggtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtttgggattcgaaccccagcccctgcacaaattgt 43413950  T
Q  182 gtattatccct 192  Q
    | |||||||||    
T  43413951 gcattatccct 43413961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 1032671 - 1032564
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtattatccctaaccaagaagtgagctaa 210  Q
    ||||||| |||||||||||| ||||||| | || |||| |||||||||| ||| ||||||||  | ||| || ||||||||| |||   || ||||||||    
T  1032671 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttacc---aaatgagctaa 1032575  T
Q  211 gctcacgggga 221  Q
    ||||| |||||    
T  1032574 gctcatgggga 1032564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 38289200 - 38289316
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaatttt 181  Q
    ||||| ||||||||||||||| ||  || ||||||| |||||||||||| ||||||| | || |||  | |||||||| |||| |||||||  | ||| |    
T  38289200 tttttttttttgtcaagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgacccctgcacatattgt 38289299  T
Q  182 gtattatccctaaccaa 198  Q
    | ||||||||| |||||    
T  38289300 gcattatcccttaccaa 38289316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 45536842 - 45536738
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||| | |||  || ||||||| |||||  | ||| ||||||| | || |||||||||||||||  |||||||||||  |||||||| ||||    
T  45536842 tttttgtcaagttgtctagtggctagagaaattcactattaagatgaataagtggggtgtccggggttcgaactccggcccctgcacaaattttgcatta 45536743  T
Q  188 tccct 192  Q
    |||||    
T  45536742 tccct 45536738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 1360101 - 1360187
Alignment:
Q  83 ttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    |||| ||||||||||||||||||  || ||||||| ||||| |||||  ||||||| | || ||||||||||||||| ||| ||||||    
T  1360101 ttttttttttgtcaagtagcctagtggttagagaaattcactttaaa-atgaataagtggggtgtccggggttcgaaccccagcccct 1360187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 4798542 - 4798596
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  4798542 ttcaccttacaaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 4798596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5245572 - 5245518
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||||| ||||||||| |||||||| || |||||||||    
T  5245572 ttcaccttataaggtgaataaattggatgtccgcggttcgaaccctggcccctgc 5245518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 8349454 - 8349564
Alignment:
Q  88 tttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattttgtatta 187  Q
    |||||||||||||| |||  || |||| || |||| ||||||| ||||||| | || ||| ||| |||||||  ||||||||||| || ||| |||||||    
T  8349454 tttttgtcaagtagtctagtggttagataaattcatcttaaagatgaataagtggggtgttcggagttcgaactccggcccctgcatatattctgtatta 8349553  T
Q  188 tccctaaccaa 198  Q
    || || |||||    
T  8349554 tcacttaccaa 8349564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 15042366 - 15042420
Alignment:
Q  119 ttcacctta-aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||||    
T  15042366 ttcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 15042420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 8350567 - 8350450
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaagg-tgaataaatcggatgtccggggttcgaatcccggcccctgcttaaattt 180  Q
    ||||| |||||||||||||| |||  || |||| || |||| |||||| | ||||||| | || |||||| ||||||||  ||||||||||| || |||     
T  8350567 tttttttttttgtcaagtagtctagtggttagataaattcatcttaaaagatgaataagtggggtgtccgaggttcgaactccggcccctgcatatattg 8350468  T
Q  181 tgtattatccctaaccaa 198  Q
    ||||||||| || |||||    
T  8350467 tgtattatcacttaccaa 8350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 41845391 - 41845510
Alignment:
Q  82 tttttctttttgtcaagtagcctatc---ggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgcttaaat 178  Q
    |||||||||||||||||||| |||     || || |||| |||||||||||| ||||||||| || ||| ||||||||||| ||||  ||||||  | ||    
T  41845391 tttttctttttgtcaagtagtctagtagtggctaaagaaattcaccttaaagatgaataaatagggtgttcggggttcgaaccccgatccctgcacatat 41845490  T
Q  179 tttgtattatccctaaccaa 198  Q
    | || ||||||||| |||||    
T  41845491 tgtgcattatcccttaccaa 41845510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 279991 - 280039
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||||| |||||||||||  ||||||||| || |||||||||||||||    
T  279991 tagagaaattcaccttaaaaatgaataaattgggtgtccggggttcgaa 280039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 635861 - 635813
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||||| |||||||||||  ||||||||| || |||||||||||||||    
T  635861 tagagaaattcaccttaaaaatgaataaattgggtgtccggggttcgaa 635813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 821664 - 821616
Alignment:
Q  111 tagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaa 159  Q
    ||||||| |||||||||||  ||||||||| || |||||||||||||||    
T  821664 tagagaaattcaccttaaaaatgaataaattgggtgtccggggttcgaa 821616  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 43508445 - 43508501
Alignment:
Q  114 agaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccct 170  Q
    |||| |||||||| ||||||||||| | || |||||||||||| || ||||||||||    
T  43508445 agaaattcacctttaaggtgaataagtggggtgtccggggttcaaaccccggcccct 43508501  T

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Target: scaffold0308 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 7204 - 7116
Alignment:
Q  82 tttttctttttgtcaagtagcctatcggatagagaatttcaccttaaaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||| ||||||||| ||||||||  || |||| |  ||||| || || |||||||||| || ||||||||||||||| ||||||||||||    
T  7204 tttttttttttgtcaggtagcctagtggctagaaa--ttcacttttaaagtgaataaatggggtgtccggggttcgaaccccggcccctgc 7116  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 6644 - 6688
Alignment:
Q  128 aaggtgaataaatcggatgtccggggttcgaatcccggcccctgc 172  Q
    ||||||||||| | || ||||||||||||||| ||||||||||||    
T  6644 aaggtgaataattggggtgtccggggttcgaaccccggcccctgc 6688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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