View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13325_low_2 (Length: 370)
Name: NF13325_low_2
Description: NF13325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13325_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 129 - 351
Target Start/End: Complemental strand, 27923977 - 27923748
Alignment:
| Q |
129 |
gaccacgatgcagcatatggg----gttgggattttatccgaagaaagaaaaacataaatgaggatttgatattactcgtgtttaaaaataatttttaaa |
224 |
Q |
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| T |
27923977 |
gaccacgatgcagcatatggatggcgttgggattttatccgaagaaagaaagacataaatgaggatttgatagtactcgtgtttaaaaataatttttaaa |
27923878 |
T |
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| Q |
225 |
atgtagcccaacaaattcatttttacgtc--tctctctcataaatggaatcattcatttctttacataaataaagaggatcttgactccggaa----atc |
318 |
Q |
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| T |
27923877 |
atgtagcccaacaaattcatttttacgtctatctctctcataaatggaatcattcatttctttacagaaataaagaggatcttgactccagaatatgatc |
27923778 |
T |
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| Q |
319 |
attttcttcatcttattaattttgatgttgtgt |
351 |
Q |
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| T |
27923777 |
attttcttcatc---ttaattttgatgttgtgt |
27923748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 27924051 - 27923974
Alignment:
| Q |
19 |
attggtgcaacaatttataaactatagatgaaacttaaaaataaattcgccatgcaatatcttcgatattcctagacc |
96 |
Q |
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| T |
27924051 |
attggtgcaacaatttataaactatagatgaaacttaaaaataaattcgccaagcaatatctttgatattcctagacc |
27923974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 27930319 - 27930223
Alignment:
| Q |
19 |
attggtgcaacaatttataaactatagatgaaacttaaaaataaattcgccatgcaatatcttcgatattcctagaccttatagtagttgttcttct |
115 |
Q |
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| T |
27930319 |
attggtgcaacaatttttaaattatatatgaaacttgaaaataaattagacaaacaatatctttgatattcctagaccctatagtagttgttcttct |
27930223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 27930219 - 27930162
Alignment:
| Q |
258 |
tctcataaatggaatcattcatttctttacataaataaagaggatcttgactccggaa |
315 |
Q |
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| T |
27930219 |
tctcataaatggaatcattcatttccttacaaaaatgaagaggatcttgactccggaa |
27930162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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