View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13326_high_4 (Length: 374)
Name: NF13326_high_4
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 359
Target Start/End: Complemental strand, 25828426 - 25828089
Alignment:
| Q |
22 |
aaagctgaaaaggatggtgaatattatgtaaaaagtgtatataggctttgtatggaatgtttggtggatacatcgcatctttgaagaccaggtttctgag |
121 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25828426 |
aaagctgaaaaggatggcgagtattatgtaaaaagtgtatataggctttgtatggaaggtttggtggatacatcgcatctttgaagaccaggtttctgag |
25828327 |
T |
|
| Q |
122 |
ccggatttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggt |
221 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25828326 |
ccggatatggcggttagaggttctcctgaaaatcaaacacttagtctgaagaatgtgtcgaggttgtttgcctacacgagttcgtttacaggataaaggt |
25828227 |
T |
|
| Q |
222 |
gtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctgg |
321 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
25828226 |
gtccaatgccctttagagtgtgttggttgtgtttcttatgattaggatatggctcacatgttttttacttgcccatttacaatgtaagtttggattatgg |
25828127 |
T |
|
| Q |
322 |
ccgacctttggaacgacattcaacagattgtcagtgat |
359 |
Q |
| |
|
| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
25828126 |
ctgtcctttggaacgacattcaatagattgtcagtgat |
25828089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 91 - 358
Target Start/End: Complemental strand, 25669885 - 25669618
Alignment:
| Q |
91 |
acatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgttt |
190 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||| |||||| |
|
|
| T |
25669885 |
acatcacatcattgaaggtcaggtttatgagccggatttggcggttaaaagttctcccgaaaatcaaacacttagttcggggaatgtgtcgagatcgttt |
25669786 |
T |
|
| Q |
191 |
gcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttact |
290 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25669785 |
gcctacacgagttcgtttacaggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatttggctcacatgtttcttact |
25669686 |
T |
|
| Q |
291 |
tgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25669685 |
tgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtga |
25669618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 172 - 354
Target Start/End: Complemental strand, 25429807 - 25429625
Alignment:
| Q |
172 |
gaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatct |
271 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
25429807 |
gaatgtgctgaggttgtttgcctacaaaagttcgtttagaggataaaggtgtccaatgccctacaaagtgtgttagttgtgtttcttctgattaagattt |
25429708 |
T |
|
| Q |
272 |
ggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtca |
354 |
Q |
| |
|
||||||| ||| | |||||| |||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
25429707 |
ggctcacgtgtcttttacttcgccatttgcaatccaagtttggattgaggctgacatttggaacgacattcaacagactgtca |
25429625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 156 - 354
Target Start/End: Complemental strand, 25472515 - 25472322
Alignment:
| Q |
156 |
aaacacttagtttggagaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgttt |
255 |
Q |
| |
|
||||||||||| || ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
25472515 |
aaacacttagtctgaagaatgtgtcttggttgtttgcctacacgagttcgtttacaggataaaggtgtctaatgcccta----gtgtgttagttgtgttt |
25472420 |
T |
|
| Q |
256 |
cttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtca |
354 |
Q |
| |
|
||||| |||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| | |||||||||| |||||||| ||||||||| |
|
|
| T |
25472419 |
cttctaattaggatttggctcacttgtcttttacttgcccatttacattgcaagtttgg-ttctggctggcctttggaacaacattcaatagattgtca |
25472322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 172 - 354
Target Start/End: Original strand, 24889105 - 24889287
Alignment:
| Q |
172 |
gaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatct |
271 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
24889105 |
gaatgtgtcgaggttgtttgcctacaaaagttcgtttagaggataaaggtgtccaataccctacaaagtgtgttagttgtgtttcttctgattaagattt |
24889204 |
T |
|
| Q |
272 |
ggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtca |
354 |
Q |
| |
|
||||||| ||| | |||||| |||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
24889205 |
ggctcacgtgtcttttacttcgccatttgcaatccaagtttggattgaggctgacatttggaacgacattcaacagactgtca |
24889287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 24888307 - 24888411
Alignment:
| Q |
50 |
taaaaagtgtatataggctttgtatggaatgtttggtggatacatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggttctcccg |
149 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||| || |||||| ||||||||||||| ||||| |
|
|
| T |
24888307 |
taaaaagtgtctataggctttgtatggaaggttcggtggatacatcgcattttcaaagaccaggtttctgggctggatttagcggttaaaggttttcccg |
24888406 |
T |
|
| Q |
150 |
aaaat |
154 |
Q |
| |
|
||||| |
|
|
| T |
24888407 |
aaaat |
24888411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 25430612 - 25430519
Alignment:
| Q |
50 |
taaaaagtgtatataggctttgtatggaatgtttggtggatacatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggtt |
143 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||||||||| | ||| || |||||||| || |||||||||||||||||||| |
|
|
| T |
25430612 |
taaaaagtgtatatgggctttgtatggaaggttcggtggatacatcgcatttccgaaaactaggtttctaggctggatttggcggttaaaggtt |
25430519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 314
Target Start/End: Original strand, 25983546 - 25983840
Alignment:
| Q |
27 |
tgaaaaggatggtgaatattatgtaaaaagtgtatataggctttgtatggaatg--------tttggtggatacatcgcatctttgaagaccaggtttct |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || | ||||||||||||| | |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
25983546 |
tgaaaaggatggtgagtattatgtaaaaagtgtgtacaagctttgtatggaaggtttggtcatttggtggatacattgcatcttctgtgaccaggattct |
25983645 |
T |
|
| Q |
119 |
gagccgg-atttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgtttgcctacacgagttcgtttataggataa |
217 |
Q |
| |
|
| | || |||||| || || ||||||||||||| ||||| ||||||| || |||||||| | | | ||||| |||| | ||||||||| | ||||| |
|
|
| T |
25983646 |
ggtctggtatttggaggcgaatggttctcccgaaagtcaaaaacttagtatgacgaatgtgtcgggattgtttgtctacgtgggttcgtttaaaagataa |
25983745 |
T |
|
| Q |
218 |
aggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttgg |
314 |
Q |
| |
|
|||||||||| || ||| || |||||| |||| || |||| || ||||| || |||| ||| || ||||||||||||| | |||||||||||| |
|
|
| T |
25983746 |
aggtgtccaatgcattat--agagtgttaaatgtgatttttcttatgaggatttgactcatatgatttgtacttgcccatttgcgatgcaagtttgg |
25983840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 14230026 - 14230099
Alignment:
| Q |
22 |
aaagctgaaaaggatggtgaatattatgtaaaaagtgtatataggctttgtatggaatgtttggtggatacatc |
95 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||| |||| |||||| ||| || ||||| |||||||||| |
|
|
| T |
14230026 |
aaagctgaaaaggatggtgagtattctctaaaaagtgcgtataagctttgcatgtaaggtttgatggatacatc |
14230099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 41837399 - 41837475
Alignment:
| Q |
229 |
gccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatg |
305 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||| ||| |||| || ||| ||||||| |||||||||||||| ||||| |
|
|
| T |
41837399 |
gccctacaaattgtgttagttgtgattctttcgatgaggacttgactcgcatgttttttacttgcccatttgcaatg |
41837475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 43031523 - 43031597
Alignment:
| Q |
126 |
atttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgtttgcctacacgag |
201 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||| | ||||||||| | |||||||||||| || | |||||||||| |
|
|
| T |
43031523 |
atttggcggtaaaaggttcccccaaaaatcaaa-atttagtttggtgcatgtgttgaggttgtctacctacacgag |
43031597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University