View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13326_high_5 (Length: 311)
Name: NF13326_high_5
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 146 - 296
Target Start/End: Complemental strand, 31645688 - 31645538
Alignment:
| Q |
146 |
atataaacactttcatatgattttactacgtaggtggtcatgcaaagacactcgtgttagtccaaattaattcagacataaagtcttgctctgaatcttt |
245 |
Q |
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| T |
31645688 |
atatgaacattttcatatgattttactatgtaggtggtcatgcaaagacactcatgttagtccaaattaattcagacataaagtcttactctgaatcttt |
31645589 |
T |
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| Q |
246 |
gtgtactttaaagtttgctgaaagggtttctggagttgagttaggagttgc |
296 |
Q |
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| T |
31645588 |
gagtactttaaagtttgctgaaagggtttctggagttgagttaggagttgc |
31645538 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 40982149 - 40982109
Alignment:
| Q |
250 |
actttaaagtttgctgaaagggtttctggagttgagttagg |
290 |
Q |
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| T |
40982149 |
actttgaagtttgctgaaagggtttctggtgttgagttagg |
40982109 |
T |
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