View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13326_high_6 (Length: 263)
Name: NF13326_high_6
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 263
Target Start/End: Complemental strand, 12841006 - 12840772
Alignment:
| Q |
27 |
aggcagcagtagaagatgaaagaaaagctgcagcaggagctgaaagaagagcaaaaacggatgccacagaaagttccaaatcggttacttgtggagtgac |
126 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12841006 |
aggcagcagtagaagatgaaagaagagctgcagcaggagctgaaagaagagcagaaaaggatgccacagaaagttccaaatcggttacttctggagtgac |
12840907 |
T |
|
| Q |
127 |
ccgagatacggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggttttctttctccactcacatttagaatatgtctttccaatgtcagt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12840906 |
ccgagatacggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggtttcctttttccactcacatttaga--atgtctttccaatgtcagt |
12840809 |
T |
|
| Q |
227 |
ttttgctctctatccatttctttacgtttgaaattcc |
263 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
12840808 |
ttttgctctctatccatttcttcacgttagaaattcc |
12840772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 39175490 - 39175622
Alignment:
| Q |
94 |
agaaagttccaaatcggttacttgtggagtgacccgagatacggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggttttctttctcca |
193 |
Q |
| |
|
||||| ||||||| | ||||||| ||| ||||| | ||| || ||||||||||||| |||||| |||||||||||||| ||||||||||||||| | |
|
|
| T |
39175490 |
agaaaattccaaaactgttacttctggtgtgacacaagaaaccgcatcaagcctattaaatactgaaaccaaggaatccagtatgggttttcttttt--- |
39175586 |
T |
|
| Q |
194 |
ctcacatttagaatatgtctttccaatgtcagttttt |
230 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||| |
|
|
| T |
39175587 |
-tcacttttagatcatatctttccaatgtcagttttt |
39175622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University