View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13326_low_1 (Length: 730)

Name: NF13326_low_1
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13326_low_1
NF13326_low_1
[»] chr6 (24 HSPs)
chr6 (200-717)||(31564316-31564843)
chr6 (55-421)||(33385314-33385670)
chr6 (55-421)||(33259583-33259959)
chr6 (458-622)||(33416366-33416536)
chr6 (55-247)||(33416152-33416345)
chr6 (1-141)||(31564838-31564971)
chr6 (55-240)||(24631975-24632161)
chr6 (99-281)||(9165228-9165418)
chr6 (579-708)||(33385707-33385837)
chr6 (292-398)||(24631864-24631970)
chr6 (5-52)||(33414741-33414788)
chr6 (210-284)||(29274300-29274376)
chr6 (634-693)||(33281320-33281376)
chr6 (5-52)||(33293147-33293194)
chr6 (6-52)||(28873045-28873091)
chr6 (651-705)||(33416538-33416592)
chr6 (1-54)||(33279087-33279139)
chr6 (634-693)||(33301947-33302003)
chr6 (315-390)||(281808-281881)
chr6 (5-52)||(33258369-33258416)
chr6 (1-52)||(33395223-33395274)
chr6 (100-141)||(33282241-33282282)
chr6 (100-141)||(33398042-33398083)
chr6 (100-141)||(33408952-33408993)
[»] chr5 (7 HSPs)
chr5 (459-613)||(30653203-30653360)
chr5 (210-332)||(11684346-11684468)
chr5 (286-351)||(30653373-30653438)
chr5 (203-284)||(32059660-32059742)
chr5 (203-247)||(10391269-10391313)
chr5 (340-391)||(11457158-11457209)
chr5 (203-242)||(29115328-29115367)
[»] scaffold0428 (6 HSPs)
scaffold0428 (185-421)||(3802-4047)
scaffold0428 (55-141)||(3704-3791)
scaffold0428 (634-693)||(12876-12932)
scaffold0428 (1-54)||(15114-15166)
scaffold0428 (5-52)||(2490-2537)
scaffold0428 (100-141)||(11970-12011)
[»] chr2 (7 HSPs)
chr2 (576-705)||(17443374-17443503)
chr2 (356-421)||(17443537-17443602)
chr2 (5-52)||(17447760-17447808)
chr2 (203-284)||(34339039-34339122)
chr2 (211-251)||(3102617-3102657)
chr2 (316-393)||(14299588-14299663)
chr2 (223-284)||(7103554-7103615)
[»] chr8 (8 HSPs)
chr8 (315-393)||(13000381-13000457)
chr8 (208-276)||(26717178-26717246)
chr8 (212-298)||(5290566-5290649)
chr8 (203-266)||(26716527-26716590)
chr8 (315-393)||(30191098-30191174)
chr8 (250-336)||(10079082-10079168)
chr8 (287-336)||(30389108-30389157)
chr8 (210-284)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (315-391)||(43115093-43115167)
chr3 (203-281)||(38462197-38462277)
chr3 (210-283)||(22232749-22232824)
chr3 (194-276)||(3015928-3016011)
chr3 (315-393)||(37273171-37273247)
chr3 (318-414)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (278-391)||(3468614-3468725)
chr7 (203-284)||(3610811-3610894)
chr7 (211-332)||(26935573-26935696)
chr7 (169-247)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (213-266)||(44207697-44207750)
chr1 (342-393)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (225-298)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (212-266)||(32920489-32920543)
chr4 (209-276)||(47970240-47970309)
chr4 (226-296)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 200 - 717
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  200 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  300 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 399  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  400 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 493  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  494 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  590 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  690 ttcatcttcaacttgtactaccacaggt 717  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 55 - 421
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  55 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 153  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  154 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 251  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  252 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 351  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  352 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 421  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 55 - 421
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  55 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 153  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  154 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 251  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  252 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 344  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  345 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 421  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 458 - 622
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  458 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 555  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  556 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 622  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 55 - 247
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  55 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 153  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  154 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 247  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31564971 - 31564838
Alignment:
Q  1 cttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatgcaagtgttggtgatatagttgctgcaattcaaaggggacagaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||| ||||||||   ||||||    
T  31564971 cttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatgtaagtgttggt-------ttgctgcaatccaaagggggtggaatag 31564879  T
Q  101 acatttaaaaattacaaaccttatgtaagaattcaaagata 141  Q
    ||||||||||| || ||| |||||||||||||| |||||||    
T  31564878 acatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  55 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 153  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  154 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 240  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 281
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  99 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 191  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  192 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 281  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 579 - 708
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  579 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 677  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  678 aattgcaacttcttcatcttcaacttgtact 708  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  292 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 391  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  392 ctaatat 398  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 33414741 - 33414788
Alignment:
Q  5 tcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 52  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414741 tcagcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  210 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 284  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 634 - 693
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  634 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 693  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 33293147 - 33293194
Alignment:
Q  5 tcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 52  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  33293147 tcagcgaatgagagacccttttttctgaggtatgctttcaccttttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  6 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 52  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 705
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  651 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 705  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33279087 - 33279139
Alignment:
Q  1 cttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 54  Q
    ||||||||| ||| ||||||||||||| || |||||||||||||||||||||||    
T  33279087 cttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 693
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  634 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 693  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  315 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 390  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 33258369 - 33258416
Alignment:
Q  5 tcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 52  Q
    |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  33258369 tcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33395223 - 33395274
Alignment:
Q  1 cttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 52  Q
    ||||||||| ||||||||||||||| |||| ||||||| ||| |||||||||    
T  33395223 cttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  100 gacatttaaaaattacaaaccttatgtaagaattcaaagata 141  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  100 gacatttaaaaattacaaaccttatgtaagaattcaaagata 141  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  100 gacatttaaaaattacaaaccttatgtaagaattcaaagata 141  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 459 - 613
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  459 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 558  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  559 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 613  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  210 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 309  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  310 catacggaaataagctgaaaaca 332  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  286 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 351  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 284  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctatttttata 247  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  340 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 391  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctattt 242  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 185 - 421
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  185 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 281  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  282 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 375  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  376 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 421  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  55 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 141  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 634 - 693
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  634 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 693  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15166 - 15114
Alignment:
Q  1 cttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 54  Q
    ||||||||| ||| ||||||||||||| || |||||||||||||||||||||||    
T  15166 cttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 2490 - 2537
Alignment:
Q  5 tcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 52  Q
    |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  2490 tcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  100 gacatttaaaaattacaaaccttatgtaagaattcaaagata 141  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 576 - 705
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  576 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 675  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  676 gcaattgcaacttcttcatcttcaacttgt 705  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  356 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 421  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 17447808 - 17447760
Alignment:
Q  5 tcagcggatgagagaccc-ttttttctgaggtatgcttgcgccttttca 52  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17447808 tcagcggatgagagaccccttttttctgaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 284  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  211 ttatcataaaattgcttatgtataagctatttttatagcaa 251  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  316 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 393  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  223 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 284  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  315 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 393  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  208 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 276  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  212 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 298  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 266  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  315 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 393  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  250 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 336  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  287 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 336  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  210 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 284  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  315 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 391  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 281  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  210 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 283  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  194 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 276  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  315 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 393  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  318 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 414  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 391
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  278 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 377  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  378 cagtctcacaagtg 391  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  203 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 284  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 332
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  211 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 308  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  309 acatacggaaataagctgaaaaca 332  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  169 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 247  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  213 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 266  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 393
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  342 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 393  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  225 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 298  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  212 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 266  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  209 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 276  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  226 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 296  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

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