View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13326_low_2 (Length: 636)
Name: NF13326_low_2
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 42139084 - 42139534
Alignment:
| Q |
12 |
tcatcagaattctaccatgtaaaaatatacagtcatcagtaccagcacagctaaataatcagtctcatcaccattcaactgtgaatgaataaagtcgtca |
111 |
Q |
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| T |
42139084 |
tcatcagaattctaccatgtaaaaatatacagtcatcagtactcgcacagctaaataatcagtctcatcaccattcaactgtgtatgaataaagtcgtca |
42139183 |
T |
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| Q |
112 |
atattaccactgctaaatggttaactcttttatgagaagaatggtccttgtacatattttataagacggatacctctctttcatcatcaatgtcagccaa |
211 |
Q |
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| T |
42139184 |
atattaccactgctaaatggttaactcttttatgagaagaatggtccttgtacatattttataagacggttacctctctttcatcatcaatgtcagccaa |
42139283 |
T |
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| Q |
212 |
gcgtttgaaactgtgccactggatgccatattcatattcacacaagaaaacatcatctccctcattgctagctttggcatactccttagggatcatgaca |
311 |
Q |
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| T |
42139284 |
gcgtttgaaactgtgccactggatgtcatattcatattcacacaagaaaacatcatctccctcattgctagctttggcatactccttagggatcatgaca |
42139383 |
T |
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| Q |
312 |
tagcaatgtcgaaggacagattccatctatattgaacagagaagcaccataatgagnnnnnnnggagaatgagttctgattaccctgaacattaaaaaac |
411 |
Q |
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| T |
42139384 |
tagcaatgtcgaaggacagattccatctatattgaacagagaagcaccataatgag-aaaaaaggagaatgagttctgattaccctgaacattaaaaaac |
42139482 |
T |
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| Q |
412 |
gagactatagaaatacaaataatacagcaccacaagttatgctcaattttaa |
463 |
Q |
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| T |
42139483 |
gagactatagaaatacaaataatacagcaccacaagttatgctcaattttaa |
42139534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 496 - 636
Target Start/End: Original strand, 42139533 - 42139673
Alignment:
| Q |
496 |
aagattaaaacacataaaacacaagaatttacattgtttggcacctctttcctacattcacataaacatttcaacaaaattgttattatctcaaaataat |
595 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42139533 |
aagatgaaaacacataaaacaacataatttacattgtttggcacctctttcctacattcacataaacatttcaacaaaattgttattatctcaaaataat |
42139632 |
T |
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| Q |
596 |
agatcacaaattctatcaaatttggaaaaccctccactagt |
636 |
Q |
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| T |
42139633 |
agatcacaaattctatcaaatttggaaaaccctccactagt |
42139673 |
T |
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