View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13326_low_3 (Length: 532)

Name: NF13326_low_3
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13326_low_3
NF13326_low_3
[»] chr5 (18 HSPs)
chr5 (18-520)||(39424538-39425040)
chr5 (137-289)||(39425354-39425506)
chr5 (377-423)||(2039868-2039914)
chr5 (377-417)||(38806867-38806907)
chr5 (377-420)||(28296325-28296368)
chr5 (377-423)||(9449463-9449509)
chr5 (377-423)||(11596474-11596520)
chr5 (376-416)||(7089111-7089151)
chr5 (363-414)||(10067023-10067074)
chr5 (380-423)||(23287371-23287414)
chr5 (377-420)||(38749582-38749625)
chr5 (365-416)||(43208281-43208332)
chr5 (377-431)||(31264424-31264478)
chr5 (370-423)||(39425209-39425262)
chr5 (380-416)||(5986888-5986924)
chr5 (391-423)||(9878065-9878097)
chr5 (345-401)||(10009842-10009898)
chr5 (381-417)||(41558706-41558742)
[»] chr6 (14 HSPs)
chr6 (358-420)||(4859113-4859175)
chr6 (359-423)||(9024177-9024241)
chr6 (379-423)||(32313398-32313442)
chr6 (380-423)||(15443689-15443732)
chr6 (369-416)||(31430281-31430328)
chr6 (377-423)||(17422274-17422320)
chr6 (377-407)||(29670903-29670933)
chr6 (377-410)||(2140500-2140533)
chr6 (365-406)||(10157995-10158036)
chr6 (378-423)||(31115479-31115524)
chr6 (379-415)||(1893390-1893426)
chr6 (391-423)||(7250996-7251028)
chr6 (371-423)||(10031564-10031616)
chr6 (371-423)||(10760855-10760906)
[»] chr3 (7 HSPs)
chr3 (377-423)||(41319329-41319375)
chr3 (359-410)||(9210826-9210877)
chr3 (377-415)||(40017388-40017426)
chr3 (377-419)||(46191364-46191406)
chr3 (353-410)||(20691326-20691383)
chr3 (377-418)||(26665135-26665176)
chr3 (370-423)||(34409354-34409407)
[»] chr4 (14 HSPs)
chr4 (362-423)||(4307054-4307115)
chr4 (334-409)||(8457933-8458008)
chr4 (342-417)||(19262909-19262983)
chr4 (364-417)||(18513247-18513300)
chr4 (377-420)||(5654610-5654653)
chr4 (364-419)||(22596986-22597041)
chr4 (377-423)||(24613720-24613766)
chr4 (382-423)||(7012060-7012101)
chr4 (377-410)||(10546155-10546188)
chr4 (380-417)||(14465316-14465353)
chr4 (388-429)||(54621800-54621841)
chr4 (377-417)||(34589725-34589765)
chr4 (371-423)||(37496698-37496750)
chr4 (391-423)||(47040264-47040296)
[»] chr2 (13 HSPs)
chr2 (384-423)||(12464875-12464914)
chr2 (359-416)||(18570973-18571030)
chr2 (347-419)||(37497118-37497190)
chr2 (377-417)||(40681982-40682022)
chr2 (377-423)||(44605158-44605204)
chr2 (377-418)||(10535778-10535819)
chr2 (377-422)||(19613632-19613677)
chr2 (372-417)||(26787812-26787857)
chr2 (377-410)||(30563416-30563449)
chr2 (377-422)||(31026690-31026735)
chr2 (377-405)||(6180884-6180912)
chr2 (364-416)||(16630796-16630848)
chr2 (359-423)||(43886588-43886652)
[»] chr8 (12 HSPs)
chr8 (377-423)||(14227216-14227262)
chr8 (377-418)||(40063950-40063991)
chr8 (377-417)||(34201065-34201105)
chr8 (358-409)||(29198479-29198530)
chr8 (377-416)||(37225762-37225801)
chr8 (377-423)||(29447129-29447175)
chr8 (377-419)||(41141650-41141692)
chr8 (377-414)||(14740733-14740770)
chr8 (321-417)||(27219785-27219882)
chr8 (379-423)||(2648269-2648313)
chr8 (377-417)||(12985392-12985432)
chr8 (371-423)||(42874516-42874568)
[»] chr7 (13 HSPs)
chr7 (353-419)||(37775980-37776046)
chr7 (378-423)||(17930457-17930502)
chr7 (353-417)||(4909151-4909215)
chr7 (367-423)||(30516366-30516422)
chr7 (377-417)||(38134425-38134465)
chr7 (370-410)||(44172902-44172942)
chr7 (388-423)||(927867-927902)
chr7 (370-408)||(16827649-16827687)
chr7 (354-416)||(17285065-17285127)
chr7 (347-416)||(2982109-2982178)
chr7 (356-408)||(18678157-18678209)
chr7 (378-410)||(23165408-23165440)
chr7 (371-411)||(48438459-48438499)
[»] chr1 (11 HSPs)
chr1 (377-423)||(3921661-3921707)
chr1 (365-420)||(14332406-14332460)
chr1 (388-423)||(39828265-39828300)
chr1 (358-416)||(2445871-2445929)
chr1 (372-418)||(17080895-17080941)
chr1 (377-419)||(19637766-19637808)
chr1 (377-410)||(11571592-11571625)
chr1 (377-410)||(40747792-40747825)
chr1 (372-417)||(43942324-43942369)
chr1 (360-416)||(10799671-10799727)
chr1 (359-423)||(40176597-40176661)
[»] scaffold0085 (1 HSPs)
scaffold0085 (378-423)||(26387-26432)
[»] scaffold0571 (1 HSPs)
scaffold0571 (370-410)||(7697-7737)


Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 39425040 - 39424538
Alignment:
Q  18 gttaggatcttggtcttctaattattatgcttttaggtgtcagtgtagtgtcaatgctccatagctattatttatatgattcacgtattctagttattag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39425040 gttaggatcttggtcttctaattattatgcttttaggtgtcagtgtagtgtcaatgctccatagctattatttatatgattcacgtattctagttattag 39424941  T
Q  118 gatcttggtgttctaactatgataattatgatgccgttgtttcaattgactctatgttttagaagaatttatagttcttataagttttgttaaatttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39424940 gatcttggtgttctaactatgataattatgatgccgttgtttcaattgactctatgttttagaagaatttatagttcttataagttttgttaaatttcaa 39424841  T
Q  218 ggatattgaaataacagtgtataatctgcaatttcaatattcggttgtgaaattgggagtctgtataatgcagttactgttttttctaggtagatataac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39424840 ggatattgaaataacagtgtataatctgcaatttcaatattcggttgtgaaattgggagtctgtataatgcagttactgttttttctaggtagatataac 39424741  T
Q  318 accatcgaaggtgtggcggtgtatgacacgtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39424740 accatcgaaggtgtggcggtgtatgacacgtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtc 39424641  T
Q  418 gacgtgagtgtccgatatctgtgcttcataccgacactttagattggaggtgtgtttagtgtctgacactgaattatgttaatttcttaaatttttactg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39424640 gacgtgagtgtccgatatctgtgcttcataccgacactttagattggaggtgtgtttggtgtctgacactgaattatgttaatttcttaaatttttactg 39424541  T
Q  518 atg 520  Q
    |||    
T  39424540 atg 39424538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 39425506 - 39425354
Alignment:
Q  137 tgataattatgatgccgttgtttcaattgactctatgttttagaagaatttatagttcttataagttttgttaaatttcaaggatattgaaataa--cag 234  Q
    |||| |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||    |    
T  39425506 tgatcattatgatgctgttgtttcaattcactatatgttttagaagaatttctagttct--caagttttgttaaatttcaaggatattgaaataatcgtg 39425409  T
Q  235 tgtataatctgcaatttcaatattcggttgtgaaattgggagtctgtataatgca 289  Q
    |||||||||||  |||||||| |||||| ||||||||| || |||| ||||||||    
T  39425408 tgtataatctgtgatttcaatgttcggtagtgaaattgagaatctgcataatgca 39425354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 2039868 - 2039914
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||    
T  2039868 tacattgaatcatgtcattttctcaaattattaccggtgtcgacgtg 2039914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 38806867 - 38806907
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  38806867 tacattgaatcatgtcatattctcaaattattattggtgtc 38806907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 28296368 - 28296325
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgac 420  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgac 28296325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 9449509 - 9449463
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||    
T  9449509 tacattgaattatgtgattttctcaaattattattggtgtcggcgtg 9449463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 11596474 - 11596520
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  11596474 tacattgaattatgtcattttctcaaattattatcggtatcgacgtg 11596520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 7089111 - 7089151
Alignment:
Q  376 atacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  7089111 atacattgaatcctgtcattttctcaaattattattagtgt 7089151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 10067023 - 10067074
Alignment:
Q  363 ttgacagatgtgaatacattgaatcatgtcattttctcaaattattattggt 414  Q
    |||||| |||||| ||||||| ||||||||||||| |||| |||||||||||    
T  10067023 ttgacacatgtgattacattgtatcatgtcattttgtcaatttattattggt 10067074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 23287371 - 23287414
Alignment:
Q  380 attgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||| |||||||||||  |||||||||||||||||||||||    
T  23287371 attgaattatgtcattttcctaaattattattggtgtcgacgtg 23287414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 38749582 - 38749625
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgac 420  Q
    |||||||||| |||||||||| |||||||||||| |||||||||    
T  38749582 tacattgaattatgtcattttttcaaattattatcggtgtcgac 38749625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 43208281 - 43208332
Alignment:
Q  365 gacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    ||||||| ||| |||||||||| ||||||||||||||||||| ||| |||||    
T  43208281 gacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 31264478 - 31264424
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtgagtgtccg 431  Q
    |||| ||||| |||||||||||||||||||||| | ||||||| ||| |||||||    
T  31264478 tacactgaattatgtcattttctcaaattattacttgtgtcgatgtgtgtgtccg 31264424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 39425262 - 39425209
Alignment:
Q  370 atgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||| ||||||||||| ||||||||||| | |||||||||||| ||| ||||    
T  39425262 atgtgattacattgaatcctgtcattttctaagattattattggtctcgtcgtg 39425209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 5986888 - 5986924
Alignment:
Q  380 attgaatcatgtcattttctcaaattattattggtgt 416  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  5986888 attgaatcatgtcatttgctcaaattattatttgtgt 5986924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 9878065 - 9878097
Alignment:
Q  391 tcattttctcaaattattattggtgtcgacgtg 423  Q
    |||| ||||||||||||||||||||||||||||    
T  9878065 tcatattctcaaattattattggtgtcgacgtg 9878097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 10009898 - 10009842
Alignment:
Q  345 acgtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctca 401  Q
    |||||| |||| ||||||  |||| |||||| |||||||||| ||||||||||||||    
T  10009898 acgtgttggtgcctgacaacgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 41558706 - 41558742
Alignment:
Q  381 ttgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||| |||||||||||||||||||||||| |||||    
T  41558706 ttgaattatgtcattttctcaaattattatttgtgtc 41558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 4859113 - 4859175
Alignment:
Q  358 tgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgac 420  Q
    ||||| |||||  ||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  4859113 tgacactgacacgtgtgattacattggattatgtcattttctcaaattattattggtgtcgac 4859175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 9024177 - 9024241
Alignment:
Q  359 gacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||| ||||| || ||| |||||||||| |||||||||||||||||||| ||| |||||||||||    
T  9024177 gacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtg 9024241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 32313442 - 32313398
Alignment:
Q  379 cattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||    
T  32313442 cattgaatcatgttattttctcaacttattattggtgtcggcgtg 32313398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 15443732 - 15443689
Alignment:
Q  380 attgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||    
T  15443732 attgaattatgttattttctcaaattattattgatgtcgacgtg 15443689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 31430328 - 31430281
Alignment:
Q  369 gatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    ||||||| |||||| |||||||||||||||||||| | ||||||||||    
T  31430328 gatgtgattacatttaatcatgtcattttctcaaaattttattggtgt 31430281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 17422274 - 17422320
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||| ||| || |||||||||||||||||||| ||||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtg 17422320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 29670933 - 29670903
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattat 407  Q
    |||||||||||||||||||||||||||||||    
T  29670933 tacattgaatcatgtcattttctcaaattat 29670903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 2140500 - 2140533
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||| |||||||||||||||||||||||    
T  2140500 tacattgaattatgtcattttctcaaattattat 2140533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 10158036 - 10157995
Alignment:
Q  365 gacagatgtgaatacattgaatcatgtcattttctcaaatta 406  Q
    |||| |||||| |||||||||| |||||||||||||||||||    
T  10158036 gacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 31115524 - 31115479
Alignment:
Q  378 acattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||  ||| |||| ||||||||||||||||||||||||||    
T  31115524 acattgaattgtgttatttactcaaattattattggtgtcgacgtg 31115479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 1893390 - 1893426
Alignment:
Q  379 cattgaatcatgtcattttctcaaattattattggtg 415  Q
    |||||||| || |||||||||||||||||||||||||    
T  1893390 cattgaattatatcattttctcaaattattattggtg 1893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 7250996 - 7251028
Alignment:
Q  391 tcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||||||||||||||||||||||| |||||    
T  7250996 tcattttctcaaattattattggtgtcaacgtg 7251028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 10031616 - 10031564
Alignment:
Q  371 tgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||| |||||||||| |||||||||||||||| | |||| |||||| |||||    
T  10031616 tgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacgtg 10031564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 10760855 - 10760906
Alignment:
Q  371 tgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||| |||||| ||| |||||||||||||||||||||||  |||||||||||    
T  10760855 tgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgacgtg 10760906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 41319329 - 41319375
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||    
T  41319329 tacattgaattatgtcattttttcaaattattattggtgtcgacgtg 41319375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 9210826 - 9210877
Alignment:
Q  359 gacattgacagatgtgaatacattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||| |||||| | |||||||| |||||||||||||||||||||||    
T  9210826 gacattgacacatgtgattccattgaattatgtcattttctcaaattattat 9210877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 40017388 - 40017426
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtg 415  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  40017388 tacattgaattatgtcattttctcaaattgttattggtg 40017426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 46191364 - 46191406
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcga 419  Q
    |||||| ||| |||| |||||||||||||||||||||||||||    
T  46191364 tacatttaattatgtgattttctcaaattattattggtgtcga 46191406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 20691383 - 20691326
Alignment:
Q  353 gtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattat 410  Q
    ||||||||||  |||| || ||| |||| ||||| |||||||||||||||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattat 20691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 26665176 - 26665135
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcg 418  Q
    |||| ||||||| |||||||||||||||||||||| ||||||    
T  26665176 tacagtgaatcacgtcattttctcaaattattatttgtgtcg 26665135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 34409354 - 34409407
Alignment:
Q  370 atgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||| |||||||||| ||||||||||||| || |||||| ||||| ||||||    
T  34409354 atgtgattacattgaattatgtcattttctcgaagtattatcggtgttgacgtg 34409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 4307115 - 4307054
Alignment:
Q  362 attgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||| |||||| ||||||| || |||| ||||||||||||||||||||||| |||||||    
T  4307115 attgacatatgtgattacattggataatgtaattttctcaaattattattggtgccgacgtg 4307054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 8458008 - 8457933
Alignment:
Q  334 cggtgtatgacacgtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattatta 409  Q
    ||||||| ||||| |||| |||||||||||| |   |||||| |||||| ||| ||||||||||||||||||||||    
T  8458008 cggtgtacgacacatgtcagtgtctgacattcatgcatgtgattacattcaattatgtcattttctcaaattatta 8457933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 19262909 - 19262983
Alignment:
Q  342 gacacgtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||| |||||||||||  ||||||||| |||||| |||||| ||| ||||||| |||||||||||||| |||||||    
T  19262909 gacatgtgtcggtgtca-acattgacacatgtgattacattcaattatgtcatcttctcaaattattactggtgtc 19262983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 18513247 - 18513300
Alignment:
Q  364 tgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    ||||| || ||| |||||||||| ||||||||||||||||||||||| ||||||    
T  18513247 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 5654610 - 5654653
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgac 420  Q
    |||||||||| |||||||||||||||||||||||  ||||||||    
T  5654610 tacattgaattatgtcattttctcaaattattatcagtgtcgac 5654653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 22596986 - 22597041
Alignment:
Q  364 tgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcga 419  Q
    ||||| |||||| ||| |||||| |||  |||||||||||||||||||||||||||    
T  22596986 tgacacatgtgattacgttgaattatgcaattttctcaaattattattggtgtcga 22597041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 24613720 - 24613766
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||| ||||||||||||||||| | |||||||||||    
T  24613720 tacattgaattatgtgattttctcaaattattagttgtgtcgacgtg 24613766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 7012101 - 7012060
Alignment:
Q  382 tgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||    
T  7012101 tgaattatgtcattttctcaaattattatcggtgtcggcgtg 7012060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 10546188 - 10546155
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||| |||||||||||||||||||||||    
T  10546188 tacattgaattatgtcattttctcaaattattat 10546155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 14465316 - 14465353
Alignment:
Q  380 attgaatcatgtcattttctcaaattattattggtgtc 417  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  14465316 attgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 54621841 - 54621800
Alignment:
Q  388 atgtcattttctcaaattattattggtgtcgacgtgagtgtc 429  Q
    |||||||||||||||| ||||||||||||||| ||| |||||    
T  54621841 atgtcattttctcaaactattattggtgtcgatgtgtgtgtc 54621800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 34589725 - 34589765
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  34589725 tacattgaattatgtcattttctcaaattgttatcggtgtc 34589765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 37496750 - 37496698
Alignment:
Q  371 tgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||| |||||||||| ||||||||||||||||  ||||| |||||| |||||    
T  37496750 tgtgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtg 37496698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 47040264 - 47040296
Alignment:
Q  391 tcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||||||||||||| |||||||||||||||    
T  47040264 tcattttctcaaattatcattggtgtcgacgtg 47040296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 12464875 - 12464914
Alignment:
Q  384 aatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  12464875 aatcatgtcattttctcaaattattattggtgtcggcgtg 12464914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 18571030 - 18570973
Alignment:
Q  359 gacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    |||| ||||| || ||| |||||||||| ||||||||||||||||||||||| |||||    
T  18571030 gacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 37497190 - 37497118
Alignment:
Q  347 gtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcga 419  Q
    ||||||||||||||||  ||||||| | | ||||||||||  || |||||||||||||||||||  |||||||    
T  37497190 gtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcga 37497118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 40682022 - 40681982
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  40682022 tacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 44605158 - 44605204
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||| ||||||||||||||||||||| || ||||||    
T  44605158 tacattgaattatgttattttctcaaattattattggcgttgacgtg 44605204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 10535778 - 10535819
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcg 418  Q
    |||| ||||| ||||||||||||||||||||||| |||||||    
T  10535778 tacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 19613632 - 19613677
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgt 422  Q
    |||||||||| |||| ||||||||||||||||||  ||||||||||    
T  19613632 tacattgaattatgttattttctcaaattattatgagtgtcgacgt 19613677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 26787812 - 26787857
Alignment:
Q  372 gtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||| ||||| |||| |||||||||||||||||| |||||||||||    
T  26787812 gtgattacatcgaattatgtcattttctcaaatttttattggtgtc 26787857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 30563449 - 30563416
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||| |||||||||||||||||||||||    
T  30563449 tacattgaattatgtcattttctcaaattattat 30563416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 31026735 - 31026690
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgt 422  Q
    |||||||||| |||||||||||| |||||||||| ||| |||||||    
T  31026735 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 31026690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 6180884 - 6180912
Alignment:
Q  377 tacattgaatcatgtcattttctcaaatt 405  Q
    |||||||||||||||||||||||||||||    
T  6180884 tacattgaatcatgtcattttctcaaatt 6180912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 16630848 - 16630796
Alignment:
Q  364 tgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    ||||| |||||| || ||||||| |||||||||||| |||||||||| |||||    
T  16630848 tgacacatgtgattaaattgaattatgtcattttcttaaattattatcggtgt 16630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 43886652 - 43886588
Alignment:
Q  359 gacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||||| ||| || |||||  ||||| ||| ||||||||| |||||||||||||    
T  43886652 gacattgacacatgtgattacgtttaatcaattcattatcttaaattattactggtgtcgacgtg 43886588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 14227262 - 14227216
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||    
T  14227262 tacattgaattatgttattttctcaaattattattggtgttgacgtg 14227216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 40063991 - 40063950
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcg 418  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  40063991 tacaatgaattatgtcattttctcaaattattattggtgtcg 40063950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 34201065 - 34201105
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  34201065 tacattgaattatgtcattttctcaaattattattagtgtc 34201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 29198479 - 29198530
Alignment:
Q  358 tgacattgacagatgtgaatacattgaatcatgtcattttctcaaattatta 409  Q
    ||||||||||  || ||| |||||||||| ||||||||||||||||||||||    
T  29198479 tgacattgacgcatatgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 37225762 - 37225801
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  37225762 tacattgaattatgttattttctcaaattattattggtgt 37225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 29447129 - 29447175
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| |||| ||||||||||||||||| | |||||||||||    
T  29447129 tacattgaattatgtgattttctcaaattattagttgtgtcgacgtg 29447175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 41141650 - 41141692
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcga 419  Q
    |||||| |||||| ||||||| |||||||||||||||||||||    
T  41141650 tacattaaatcatatcattttttcaaattattattggtgtcga 41141692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 14740770 - 14740733
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggt 414  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  14740770 tacattgaattatgtcattttctcacattattattggt 14740733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 417
Target Start/End: Complemental strand, 27219882 - 27219785
Alignment:
Q  321 atcgaaggtgtggc-ggtgtatgacacgtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||||| | ||||| | ||| |||||  ||||||||||||| | |||||| ||| || ||| ||||||| |||| |||||| ||||||||||    
T  27219882 atcgaaggtgtgtctggtgtctaacatgtgtctttgtctgacattgatacatgtgattactttcaataatgtcatattctaaaattactattggtgtc 27219785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 2648269 - 2648313
Alignment:
Q  379 cattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||| ||| |||| |||||||||||||||||||||||| ||||||    
T  2648269 catttaattatgttattttctcaaattattattggtgttgacgtg 2648313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 12985432 - 12985392
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  12985432 tacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 42874568 - 42874516
Alignment:
Q  371 tgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||| |||||||||| |||||||||||||||| | |||  ||||||||||||    
T  42874568 tgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtg 42874516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 37776046 - 37775980
Alignment:
Q  353 gtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcga 419  Q
    |||||| ||| ||||| |||||| |||||| ||| ||||||||||||||||||| || |||||||||    
T  37776046 gtgtcttacactgacacatgtgattacatttaattatgtcattttctcaaattactactggtgtcga 37775980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 17930502 - 17930457
Alignment:
Q  378 acattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||||    
T  17930502 acattgaatgatgtcattttcttaaattagtattggtgtcgacgtg 17930457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 4909215 - 4909151
Alignment:
Q  353 gtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    ||||| |||| ||||| || ||| |||| ||||| |||| |||||||||||||||||||||||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtc 4909151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 30516366 - 30516422
Alignment:
Q  367 cagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||| || |||||||||| || |||||||||||||||||| || |||||||||||    
T  30516366 cagatgcgattacattgaattatatcattttctcaaattattgttagtgtcgacgtg 30516422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 38134425 - 38134465
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  38134425 tacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 44172902 - 44172942
Alignment:
Q  370 atgtgaatacattgaatcatgtcattttctcaaattattat 410  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  44172902 atgtgattacattgaattatgtcattttctcaaattattat 44172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 927867 - 927902
Alignment:
Q  388 atgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||||||||||||||||| |||||||||||    
T  927867 atgtcattttctcaaattattattagtgtcgacgtg 927902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 16827687 - 16827649
Alignment:
Q  370 atgtgaatacattgaatcatgtcattttctcaaattatt 408  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  16827687 atgtgattacattgaatcatgtcatttgctcaaattatt 16827649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 17285127 - 17285065
Alignment:
Q  354 tgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    |||||||||  |||| |||||| || ||||||| || ||||| ||||||||||||||||||||    
T  17285127 tgtctgacacagacacatgtgattaaattgaattatatcattctctcaaattattattggtgt 17285065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 2982178 - 2982109
Alignment:
Q  347 gtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    ||||||||||| ||||   |||||||||| || ||||||| ||| |||||||||| |||||||| |||||    
T  2982178 gtgtcggtgtcagacaccaacagatgtgattagattgaattatgacattttctcagattattatcggtgt 2982109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 18678209 - 18678157
Alignment:
Q  356 tctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattatt 408  Q
    ||||||||||||| | |||| || ||||||| |||||||||||||||| ||||    
T  18678209 tctgacattgacacacgtgattatattgaattatgtcattttctcaaaatatt 18678157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 410
Target Start/End: Original strand, 23165408 - 23165440
Alignment:
Q  378 acattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||||||||||||||||||| ||||||    
T  23165408 acattgaatcatgtcattttctcaaaatattat 23165440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 48438499 - 48438459
Alignment:
Q  371 tgtgaatacattgaatcatgtcattttctcaaattattatt 411  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  48438499 tgtgattacattgaatcgtgtcattttcccaaattattatt 48438459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 3921707 - 3921661
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  3921707 tacattgaattatgtcattttctcaaattattattgatgttgacgtg 3921661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 14332460 - 14332406
Alignment:
Q  365 gacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgac 420  Q
    |||| |||||| |||||||||| |||||||||||||||||| |||| |||||||||    
T  14332460 gacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 39828300 - 39828265
Alignment:
Q  388 atgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||| |||||||||||||||||||||||||||||||    
T  39828300 atgttattttctcaaattattattggtgtcgacgtg 39828265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 2445929 - 2445871
Alignment:
Q  358 tgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    |||||| |||| || ||| || ||||||| |||||||||||||||||||| ||||||||    
T  2445929 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 2445871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 17080895 - 17080941
Alignment:
Q  372 gtgaatacattgaatcatgtcattttctcaaattattattggtgtcg 418  Q
    |||| |||||| ||| |||| ||||||||||||||||||||||||||    
T  17080895 gtgattacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 19637808 - 19637766
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattattggtgtcga 419  Q
    |||||||||| |||||||||||| |||||||||| ||||||||    
T  19637808 tacattgaataatgtcattttcttaaattattatcggtgtcga 19637766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 11571625 - 11571592
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||| |||||||||||||||||||||||    
T  11571625 tacattgaattatgtcattttctcaaattattat 11571592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 40747792 - 40747825
Alignment:
Q  377 tacattgaatcatgtcattttctcaaattattat 410  Q
    |||||||||| |||||||||||||||||||||||    
T  40747792 tacattgaattatgtcattttctcaaattattat 40747825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 43942369 - 43942324
Alignment:
Q  372 gtgaatacattgaatcatgtcattttctcaaattattattggtgtc 417  Q
    |||| |||||||||| |||| |||||||||||| ||||||||||||    
T  43942369 gtgattacattgaattatgttattttctcaaatcattattggtgtc 43942324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 10799727 - 10799671
Alignment:
Q  360 acattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 416  Q
    |||||||||||||| | |||||| ||| |||| ||||||||||||||| || |||||    
T  10799727 acattgacagatgttattacattaaattatgttattttctcaaattatcatgggtgt 10799671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 40176661 - 40176597
Alignment:
Q  359 gacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    |||| ||||| |||||| |||||||||| | |||||||||||||| | |||| ||||| ||||||    
T  40176661 gacactgacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgtg 40176597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 26432 - 26387
Alignment:
Q  378 acattgaatcatgtcattttctcaaattattattggtgtcgacgtg 423  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||    
T  26432 acattgaattatgtgattttctcaaattattagtggtgtcgacgtg 26387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 7737 - 7697
Alignment:
Q  370 atgtgaatacattgaatcatgtcattttctcaaattattat 410  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  7737 atgtgattgcattgaattatgtcattttctcaaattattat 7697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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