View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13326_low_4 (Length: 522)
Name: NF13326_low_4
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 4 - 508
Target Start/End: Complemental strand, 32724295 - 32723790
Alignment:
| Q |
4 |
gaaatagaagaaactaattagggttcaggtgattttccaagtagtagtagaagcataaaatgttaatagagtaatgaaggtaataggaaaatctaattag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
32724295 |
gaaatagaagaaactaattagggttcaggtgattttccaagtagtagtagaagcataaaatgttaatagagtaatgaaggtaataggaaaaagttattag |
32724196 |
T |
|
| Q |
104 |
gtttggtttagggttcaggtgattttgatgttgatagagagtaaa-gaaggaaatagnnnnnnnngacttatttgtgttggcttaggatttgtctgagag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32724195 |
gtttggtttagggttcaggtgattttgatgttgatagagagtaaacgaaggaaatagaaaaaaaaaacttatttgtgttggcttaggatttgtctgagag |
32724096 |
T |
|
| Q |
203 |
attgtttgtatatggaagatatttcttgaatactatgagcattatcattttgaaaagcttgatttagttactaatcagtttgtttaaagttattaattgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32724095 |
attgtttgtatatggaagatatttcttgaatactatgagcattatcattttgaaaagcttgatttagttactaatcagtttgtttaaagttattaattgt |
32723996 |
T |
|
| Q |
303 |
tctagttgttaattgttctaccaatattattgttatgcgaggttgacatgagattgacttataatttcaattttatcttggattagttctttaagtttct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723995 |
tctagttgttaattgttctaccaatattattgttatgcgaggttgacatgagattgacttataatttcaattttatcttggattagttctttaagtttct |
32723896 |
T |
|
| Q |
403 |
aatagaatgcgcataatattgtctaagtaatttgttagtagtgggatatgctttctaattcttggaagtaaaatggaatctgagattgctaatagatatc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723895 |
aatagaatgcgcataatattgtctaagtaatttgttagtagtgggatatgctttctaattcttggaagtaaaatggaatctgagattgctaatagatatc |
32723796 |
T |
|
| Q |
503 |
ctttgc |
508 |
Q |
| |
|
|||||| |
|
|
| T |
32723795 |
ctttgc |
32723790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 4 - 508
Target Start/End: Complemental strand, 32732750 - 32732245
Alignment:
| Q |
4 |
gaaatagaagaaactaattagggttcaggtgattttccaagtagtagtagaagcataaaatgttaatagagtaatgaaggtaataggaaaatctaattag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
32732750 |
gaaatagaagaaactaattagggttcaggtgattttccaagtagtagtagaagcataaaatgttaatagagtaatgaaggtaataggaaaaagttattag |
32732651 |
T |
|
| Q |
104 |
gtttggtttagggttcaggtgattttgatgttgatagagagtaaa-gaaggaaatagnnnnnnnngacttatttgtgttggcttaggatttgtctgagag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32732650 |
gtttggtttagggttcaggtgattttgatgttgatagagagtaaacgaaggaaatagaaaaaaaaaacttatttgtgttggcttaggatttgtctgagag |
32732551 |
T |
|
| Q |
203 |
attgtttgtatatggaagatatttcttgaatactatgagcattatcattttgaaaagcttgatttagttactaatcagtttgtttaaagttattaattgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32732550 |
attgtttgtatatggaagatatttcttgaatactatgagcattatcattttgaaaagcttgatttagttactaatcagtttgtttaaagttattaattgt |
32732451 |
T |
|
| Q |
303 |
tctagttgttaattgttctaccaatattattgttatgcgaggttgacatgagattgacttataatttcaattttatcttggattagttctttaagtttct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32732450 |
tctagttgttaattgttctaccaatattattgttatgcgaggttgacatgagattgacttataatttcaattttatcttggattagttctttaagtttct |
32732351 |
T |
|
| Q |
403 |
aatagaatgcgcataatattgtctaagtaatttgttagtagtgggatatgctttctaattcttggaagtaaaatggaatctgagattgctaatagatatc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32732350 |
aatagaatgcgcataatattgtctaagtaatttgttagtagtgggatatgctttctaattcttggaagtaaaatggaatctgagattgctaatagatatc |
32732251 |
T |
|
| Q |
503 |
ctttgc |
508 |
Q |
| |
|
|||||| |
|
|
| T |
32732250 |
ctttgc |
32732245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 32743142 - 32743177
Alignment:
| Q |
263 |
gatttagttactaatcagtttgtttaaagttattaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
32743142 |
gatttagttactaatcagtttgtttaaagttattaa |
32743177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 32743181 - 32743223
Alignment:
| Q |
318 |
ttctaccaatattattgttatgcgaggttgacatgagattgac |
360 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
32743181 |
ttctaccaatgttattgttatgtgaggttgacatgagattgac |
32743223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 32743067 - 32743100
Alignment:
| Q |
172 |
tatttgtgttggcttaggatttgtctgagagatt |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
32743067 |
tatttgcgttggcttaggatttgtctgagagatt |
32743100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University