View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13326_low_5 (Length: 446)
Name: NF13326_low_5
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 3838840 - 3839277
Alignment:
| Q |
1 |
tttcaagacaagcaaattcactggaggtctgctatcaattccattatttcctatacttccatctcaggtaataacaccaagctgtgctctagaattaata |
100 |
Q |
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| T |
3838840 |
tttcaagacaagcaaattcactggaggtctgctatcaattccattatttcctatacttccatctcaggtaataacaccaagctgtgctctagaattaata |
3838939 |
T |
|
| Q |
101 |
tgactgaatttgttttcctcaaagccttcaacataaacattcaccctccaagggctcctgtgataaaaagaagtgatttggaatccccccaattttcact |
200 |
Q |
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| T |
3838940 |
tgactgaatttgttttcctcaaagccttcaacataaacattcaccctccaagggctcctgtgataaaa-gaagtgatttggaatccccccaattttcact |
3839038 |
T |
|
| Q |
201 |
ggctcaaggttaacactgatggtgcactggttaagaatccaattaacactgtcatgggtgttttgctgagaacattccggactgctctactgccttcact |
300 |
Q |
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| T |
3839039 |
ggctcaaggttaacactgatggtgcactggttaagaatccaattaacactgccatgggtgttttgctgagaacattctggactgctctactgccttcact |
3839138 |
T |
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| Q |
301 |
gctgaattatatgctgtcatgattgctattgaaattgcagatagaaaaaattggaggtttctttggcttgaaaccgactctcaattggtggtgcttgctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3839139 |
gctgaattatatgctgtcatgattgctattgaaattgcagatagaaaaaattggaggtttctttggcttgaaaccgaatctcaataggtggtgcttgctt |
3839238 |
T |
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| Q |
401 |
taaaagatgctagaatggttccttggaacattaggaatag |
440 |
Q |
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| T |
3839239 |
t-aaagatgctagaatggttccttggaacattaggaatag |
3839277 |
T |
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