View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13326_low_6 (Length: 444)
Name: NF13326_low_6
Description: NF13326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13326_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 122 - 442
Target Start/End: Complemental strand, 41546532 - 41546210
Alignment:
| Q |
122 |
tgattgagtttatgtgtaaaaatgttacacagccaatgcataaaacattaatctcaatta---ataattaagagtttcatgaaggtctaaaaaattaccg |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
41546532 |
tgattgagtttatgtgtaaaaatgttacacagtcaatgcataaca-attaatctcaattactaataattaggagtttcatgaaggtctaaaaaattaccg |
41546434 |
T |
|
| Q |
219 |
aattgccatcgagcttgaactagtccaacttgtggattttgatcaaggaatggaatggtgcggtaaagaaagttagactcaggttgaaaatcagcatcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41546433 |
aattgccatcgagcttgaactagtccaacttgtggattttgatcaaggaatggaatggtgcggtaaagaaagttagactcaggttgaaaatcagcatcaa |
41546334 |
T |
|
| Q |
319 |
agatagcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctattttcccttatctcatactt |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41546333 |
agatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctattttcccttatctcatactt |
41546234 |
T |
|
| Q |
419 |
tatgtttatgcctttgcttctcca |
442 |
Q |
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||||||||||||||| |||||||| |
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| T |
41546233 |
tatgtttatgccttttcttctcca |
41546210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 300 - 442
Target Start/End: Original strand, 26832654 - 26832796
Alignment:
| Q |
300 |
ggttgaaaatcagcatcaaagatagcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
399 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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| T |
26832654 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
26832753 |
T |
|
| Q |
400 |
tttcccttatctcatactttatgtttatgcctttgcttctcca |
442 |
Q |
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| T |
26832754 |
tgtccctaacttcatactttatattcacacctttgcttctcca |
26832796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 41546679 - 41546615
Alignment:
| Q |
19 |
gaaatgatagtccaatgacatctcttgcattcttgtcattaagcattcatcagcattaactgcaa |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41546679 |
gaaatgatagtccaatgacatctcttgcattcttgtcattaagcattcatcagcattaactgcaa |
41546615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 424
Target Start/End: Original strand, 26785933 - 26786060
Alignment:
| Q |
297 |
tcaggttgaaaatcagcatcaaagatagcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
396 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
26785933 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
26786032 |
T |
|
| Q |
397 |
tattttcccttatctcatactttatgtt |
424 |
Q |
| |
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| || ||||| | |||||||||||||| |
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| T |
26786033 |
tgttgtccctaacttcatactttatgtt |
26786060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 424
Target Start/End: Original strand, 26791673 - 26791800
Alignment:
| Q |
297 |
tcaggttgaaaatcagcatcaaagatagcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
396 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
26791673 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
26791772 |
T |
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| Q |
397 |
tattttcccttatctcatactttatgtt |
424 |
Q |
| |
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| || ||||| | |||||||||||||| |
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| T |
26791773 |
tgttgtccctaacttcatactttatgtt |
26791800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 424
Target Start/End: Original strand, 26822574 - 26822701
Alignment:
| Q |
297 |
tcaggttgaaaatcagcatcaaagatagcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
396 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
26822574 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
26822673 |
T |
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| Q |
397 |
tattttcccttatctcatactttatgtt |
424 |
Q |
| |
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| || ||||| | |||||||||||||| |
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| T |
26822674 |
tgttgtccctaacttcatactttatgtt |
26822701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 26831705 - 26831746
Alignment:
| Q |
34 |
tgacatctcttgcattcttgtcattaagcattcatcagcatt |
75 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
26831705 |
tgacatctcttgcatccttgtcattaaacattcatccgcatt |
26831746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 41917576 - 41917455
Alignment:
| Q |
300 |
ggttgaaaatcagcatcaaagatagcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
399 |
Q |
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|||||||||||||||||||| || ||||||| ||||| | || |||||||||||||||||||||||||| | ||| || |||||||| |||||||||| |
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| T |
41917576 |
ggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctat |
41917477 |
T |
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| Q |
400 |
tttcccttatctcatactttat |
421 |
Q |
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| ||||| | ||||||||||| |
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| T |
41917476 |
tgtccctaacttcatactttat |
41917455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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