View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13327_high_4 (Length: 384)

Name: NF13327_high_4
Description: NF13327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13327_high_4
NF13327_high_4
[»] chr6 (5 HSPs)
chr6 (28-175)||(32684079-32684226)
chr6 (233-361)||(32684284-32684412)
chr6 (233-327)||(32692182-32692276)
chr6 (290-359)||(32560013-32560082)
chr6 (141-175)||(32692090-32692124)
[»] scaffold1113 (2 HSPs)
scaffold1113 (102-175)||(61-134)
scaffold1113 (141-173)||(1872-1904)
[»] scaffold0961 (1 HSPs)
scaffold0961 (141-173)||(1713-1745)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 32684079 - 32684226
Alignment:
Q  28 cagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32684079 cagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct 32684178  T
Q  128 gatttagcattcaaggcaagtttttctctaacaataattttgattcta 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32684179 gatttagcattcaaggcaagtttttctctaacaataattttgattcta 32684226  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 32684284 - 32684412
Alignment:
Q  233 cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa 332  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32684284 cctctaaaccagcagatctggcagctgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa 32684383  T
Q  333 gacctcattgcgttatattgtgatagtca 361  Q
    ||||||||||||||||||| |||||||||    
T  32684384 gacctcattgcgttatattttgatagtca 32684412  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 32692182 - 32692276
Alignment:
Q  233 cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag 327  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  32692182 cctctaaaccagcagatctggcagctgaattgtgtgctgaaatgcaaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag 32692276  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 32560082 - 32560013
Alignment:
Q  290 aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32560082 aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagt 32560013  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 32692090 - 32692124
Alignment:
Q  141 aggcaagtttttctctaacaataattttgattcta 175  Q
    |||||||||||||||||||||||||||||||||||    
T  32692090 aggcaagtttttctctaacaataattttgattcta 32692124  T

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Target: scaffold1113 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 134 - 61
Alignment:
Q  102 gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattcta 175  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  134 gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattcta 61  T

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Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
Q  141 aggcaagtttttctctaacaataattttgattc 173  Q
    |||||||||||||||||||||| ||||||||||    
T  1904 aggcaagtttttctctaacaatgattttgattc 1872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 1713 - 1745
Alignment:
Q  141 aggcaagtttttctctaacaataattttgattc 173  Q
    |||||||||||||||||||||| ||||||||||    
T  1713 aggcaagtttttctctaacaatgattttgattc 1745  T

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