View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13327_low_2 (Length: 483)
Name: NF13327_low_2
Description: NF13327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13327_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 270 - 468
Target Start/End: Complemental strand, 9660410 - 9660206
Alignment:
| Q |
270 |
tatcaattttattaatatgattacttgaacaatggcagaccaaatgtctcagttacaagca-------agacagaatttatggttcctttttctctagtg |
362 |
Q |
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| T |
9660410 |
tatcaattttgttaatatgattacttgaacaatggaagaccaaatgtctcagttacaagtacaatctaagacaaaatttatggttccttgttct-tagtg |
9660312 |
T |
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| Q |
363 |
gatgttttcctaaaataacaaagcacaatttgtaagcaataactggtaatcaaaagctgatgtagtagtttatgagtcatagtcacagttcctttctttc |
462 |
Q |
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| T |
9660311 |
gatgttttcctaaaataacaaagcacaatttgtgagcaataactggtaaccaaaagctgatgtagtagtttatgagtcatagtcacagttgctttctttc |
9660212 |
T |
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| Q |
463 |
cctatg |
468 |
Q |
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|||||| |
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| T |
9660211 |
cctatg |
9660206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 9660738 - 9660506
Alignment:
| Q |
18 |
ggtattacttgtgaaattggctatgctttgaggaattctcatgtgagtacatagtgtttgtaaatacaacaaattaaaagttgaacatagacttcagata |
117 |
Q |
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| T |
9660738 |
ggtagtacttgtgaaattggctatgctttgagcaattctcatatgagtgcatagtgtttgtagatacaag---ttaaaagtagaacatagacttcagtta |
9660642 |
T |
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| Q |
118 |
tnnnnnnnnnnnnnnnntttagtggtaaaattcatacataataaatgtggagaaac--gaagaattgtgagttagaaatttactctaacctatcaaatat |
215 |
Q |
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| T |
9660641 |
---aacaatttaaaaagtttagtagtaaaattcacacataataaatgctaaaaaaaatgaggaattg--agttagaaatttactctaacctatcaaatat |
9660547 |
T |
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| Q |
216 |
ttttactatctttttaccatttgaattgtgattatgaaacaa |
257 |
Q |
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| T |
9660546 |
ttttac-atctttttatcatttgaattgtgattatgaaacaa |
9660506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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