View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13327_low_3 (Length: 418)
Name: NF13327_low_3
Description: NF13327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13327_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 8509391 - 8509786
Alignment:
| Q |
9 |
gagatgaagaatttaaacacatccaatttcagttacttacattttaggtcacatgttaagtgagtgagataggaaagaagcaaaactaatgcatgaaaa- |
107 |
Q |
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| T |
8509391 |
gagatgaagaatttaaacacatccaatttcagttacttacattttaggtcacatgttaagtgagtgagataggaaagaagcaaaactaatgcatgaaaaa |
8509490 |
T |
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| Q |
108 |
aatttggtggctaattttcatacttttcccttaacttgatgatggccacttctcaaaatgctttgtttatttggagggattattcttcaagtcaattaac |
207 |
Q |
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| T |
8509491 |
aatttggtggctaattttcatacttttcccttaacatgatgatggccacttctcaaaatgctttgtttatttggagggattattcttcaagtcaattaac |
8509590 |
T |
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| Q |
208 |
ttcttagagggaaaaagaaagagaatctagcttaccttgaattgtaattgaaagggatgtgacataaaatatatagcatgcataattaataaacttataa |
307 |
Q |
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| T |
8509591 |
ttcttagagggaaaaagaaagagaatctagcttaccttgaattgtaattgaaagggatgtgacataaaatatatagcatgcataattaataaacttataa |
8509690 |
T |
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| Q |
308 |
aagtatgtatacatacatgtgaagtttgctagtgcatttcgtaatgcaataaaattttgcacttttaggataacctattcatgtctcaatcattct |
403 |
Q |
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| T |
8509691 |
aagtatgtatacatacatgtgaagtttgctagtgcatttcgtaatgcaataaaattttgcacttttaggataacctattcatgtctcaatcattct |
8509786 |
T |
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