View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13328_low_1 (Length: 287)
Name: NF13328_low_1
Description: NF13328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13328_low_1 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 675238 - 674998
Alignment:
| Q |
38 |
tggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaatttt-gcgtgcacctcaag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
675238 |
tggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaag |
675139 |
T |
|
| Q |
137 |
cttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaat |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
675138 |
cttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaat |
675039 |
T |
|
| Q |
237 |
tgcttaggttcattttctggtctggagcgttgctgatgatg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
675038 |
tgcttaggttcattttctggtctggagcgttgctgaagatg |
674998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 749834 - 749594
Alignment:
| Q |
38 |
tggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaatttt-gcgtgcacctcaag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
749834 |
tggatatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaag |
749735 |
T |
|
| Q |
137 |
cttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaat |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749734 |
cttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaat |
749635 |
T |
|
| Q |
237 |
tgcttaggttcattttctggtctggagcgttgctgatgatg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
749634 |
tgcttaggttcattttctggtctggagcgttgctgaagatg |
749594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 277
Target Start/End: Original strand, 2634134 - 2634368
Alignment:
| Q |
41 |
atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttc |
140 |
Q |
| |
|
|||| ||||||||| | ||||||||||| |||| || |||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||| || |
|
|
| T |
2634134 |
atataattgatataatttctgagattgtattgaagttcatttccatatgtgttgccttataatgtctcaatattttaatttttattgcacctcaagcctc |
2634233 |
T |
|
| Q |
141 |
aaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgct |
240 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| ||| |||||| ||||||| |
|
|
| T |
2634234 |
aaaatagacttataacatcatagttcaaatgtctctttttcaggctggttgtgtttgttcgtttcaatagaagggttattctctatctggctgaattgct |
2634333 |
T |
|
| Q |
241 |
taggttcattttctggtctggagcgttgctgatgatg |
277 |
Q |
| |
|
| ||| || || |||||||||||| |||||| |||| |
|
|
| T |
2634334 |
tcggt--atcttgtggtctggagcggtgctgaagatg |
2634368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 2495705 - 2495933
Alignment:
| Q |
41 |
atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt-----tgcattatattgtctcaatattttaattttgcgtgcacctcaa |
135 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| || |||||| |||||| ||| ||||| |||||||||||||| ||||| ||||||| || |
|
|
| T |
2495705 |
atatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttattttaattgcacctgaa |
2495804 |
T |
|
| Q |
136 |
gcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaa |
235 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | || || ||||||| || |
|
|
| T |
2495805 |
gcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttcctttcaatagaagggttactcgctggctggctgaa |
2495904 |
T |
|
| Q |
236 |
ttgcttaggttcattttctggtctggagc |
264 |
Q |
| |
|
|| |||||||| |||| ||||||||||| |
|
|
| T |
2495905 |
ttccttaggtttgttttgtggtctggagc |
2495933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 9564474 - 9564347
Alignment:
| Q |
150 |
ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcat |
249 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9564474 |
ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaattgcttaggttcat |
9564375 |
T |
|
| Q |
250 |
tttctggtctggagcgttgctgatgatg |
277 |
Q |
| |
|
||| |||||||||| ||||||| |||| |
|
|
| T |
9564374 |
tttgtggtctggagtattgctgaagatg |
9564347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 2504152 - 2504286
Alignment:
| Q |
88 |
tgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagac-ttataacttcatagttgaaatgtctctttttcaggtt |
186 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||| |||| |||||||| || ||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
2504152 |
tgtgttgccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctc--tttcaggtt |
2504249 |
T |
|
| Q |
187 |
ggtcgtgtttgttcatttcaatagaagggtaattcac |
223 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
2504250 |
ggctgtgtttgtttgtttcaatagaagggttattcac |
2504286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 7332004 - 7331830
Alignment:
| Q |
41 |
atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt--tgcattatattgtctcaatattttaattttgcgtgcacctcaagct |
138 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||||| |||||| || |||| |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
7332004 |
atatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtgttgtcttatgatgtctcaatattataattttaattgcaccttaagcc |
7331905 |
T |
|
| Q |
139 |
tcaaaatagact-tataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaa |
212 |
Q |
| |
|
|| ||||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
7331904 |
tcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa |
7331830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 2485414 - 2485528
Alignment:
| Q |
163 |
gttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctgga |
262 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||| ||||| | ||||||| |||| | ||||||| | ||||||| ||||||||| ||||||||| |
|
|
| T |
2485414 |
gttgaaatgtcactttttcaggttgattgtgtttgttcgtttcagttgaagggttattcgcaggctggctgagttgcttatgttcattttgtggtctgga |
2485513 |
T |
|
| Q |
263 |
gcgttgctgatgatg |
277 |
Q |
| |
|
|| ||||||| |||| |
|
|
| T |
2485514 |
gccttgctgaagatg |
2485528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 2447037 - 2447109
Alignment:
| Q |
126 |
tgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt |
199 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
2447037 |
tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtt |
2447109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 2641633 - 2641571
Alignment:
| Q |
160 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
2641633 |
atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca |
2641571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 2649126 - 2649064
Alignment:
| Q |
160 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
2649126 |
atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca |
2649064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 2447116 - 2447159
Alignment:
| Q |
234 |
aattgcttaggttcattttctggtctggagcgttgctgatgatg |
277 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
2447116 |
aattgcttaggttcattttatggtctggagctttgctgaagatg |
2447159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 2374 - 2605
Alignment:
| Q |
41 |
atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttc |
140 |
Q |
| |
|
|||| |||||| || || || ||||| ||||||| || |||||| || |||||| ||| | ||||||||||||||||| || |||||||||| | || |
|
|
| T |
2374 |
atataattgatttattgtcttagattatagtgaagttcatttccatatatgttgccttacaatgtctcaatattttaatatttattgcacctcaatcctc |
2473 |
T |
|
| Q |
141 |
aaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgct |
240 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
2474 |
aaaatagacttataacgtcatagttgaaatgtctctttttcaggttggttgtgtttgttcgtttcaatagaagggttattctctagctggctgaattgct |
2573 |
T |
|
| Q |
241 |
taggttcattttctggtctggagcgttgctga |
272 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
2574 |
taggttcatttgtgggtctggagcgttgctga |
2605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University