View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13328_low_2 (Length: 282)
Name: NF13328_low_2
Description: NF13328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13328_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 4853784 - 4853661
Alignment:
| Q |
136 |
catgtgtaaacttacatacattataaagattaaaagta--aagtttatcttaaaacttgtttactttatattaaagacataattttataataaatagaaa |
233 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4853784 |
catgtgcaaacttgcatacattataaagattaaaagtagtaagtttatcttagaacttgtttactttatattaaaaacataattttataataaatagaaa |
4853685 |
T |
|
| Q |
234 |
ttactactttcaataaaaacatca |
257 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4853684 |
ttactactttcaataaaaacatca |
4853661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 4853615 - 4853561
Alignment:
| Q |
203 |
attaaagacataattttataataaatagaaattactactttcaataaaaacatca |
257 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4853615 |
attaaaaacataattttataataaatagaaataactactttcaataaaaacatca |
4853561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18247755 - 18247807
Alignment:
| Q |
177 |
tttatcttaaaacttgtttactttatattaaagacataattttataataaata |
229 |
Q |
| |
|
|||||||||||| || | | ||||||||||| |||||||||||||||||||| |
|
|
| T |
18247755 |
tttatcttaaaatttatacattttatattaaatacataattttataataaata |
18247807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University