View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13329_high_3 (Length: 340)
Name: NF13329_high_3
Description: NF13329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13329_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 543425 - 543112
Alignment:
| Q |
18 |
aaaaagtcgtgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaattctcatttgcccaacaatat----------c |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
543425 |
aaaaagtcatgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaattctcatttgcccaacaatatttatgagtatc |
543326 |
T |
|
| Q |
108 |
tttccacctctctagtgccttccattgacggtcaccaacctctatatcgtggcttttgattgggttttatattcacttcatcttcttttccttttcatta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
543325 |
tttccacctctctagtgccttccattgacggtcaccaacctctgtatcgtggcttttgattgggctttatattcacttcatcttcttttccttttcatta |
543226 |
T |
|
| Q |
208 |
attttgcatggaatatgatatgatatgaccaacgaagcatagtaattatgagtgtacattattctcacaattaataactggtaactagtaagtacggctt |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
543225 |
atttagcatggaatatgatatgatatgaccaacgaagcatagtaattatgagtgtacattattctcacaattaataactggtaattagtaagtactgctt |
543126 |
T |
|
| Q |
308 |
taacatgttataca |
321 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
543125 |
taacatgtcataca |
543112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 26182738 - 26182648
Alignment:
| Q |
18 |
aaaaagtcgtgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaattctcatttgcccaacaatatct |
108 |
Q |
| |
|
||||| ||||||||||| ||||| || ||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
26182738 |
aaaaaatcgtgcaaatcacacgaatcggtataagagtgagcttgccattcaattactgtgttttttaattctgatttgcccaacaatatct |
26182648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 26182617 - 26182531
Alignment:
| Q |
142 |
ccaacctctatatcgtggcttttgattgggttttatattcacttcatct---tcttttccttttcattaattttgcatggaatatga |
225 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||||| |||| | |||||||||||||||||| |
|
|
| T |
26182617 |
ccaacctctatatcgtagcttttgtttggtttttatattcaattcatcttcttcttttccctttcttatattttgcatggaatatga |
26182531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 33509450 - 33509406
Alignment:
| Q |
237 |
caacgaagcatagtaattatgagtgtacattattctcacaattaa |
281 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33509450 |
caacgaaatatagtaattatgaatgtacattattctcacaattaa |
33509406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 35753140 - 35753205
Alignment:
| Q |
160 |
cttttgattgggttttatattcacttcatcttcttttccttttcattaattttgcatggaatatga |
225 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35753140 |
cttttgcttggtttttatattcacttcgtcttcttttcattttctttaattttgcatggaatatga |
35753205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 35752210 - 35752252
Alignment:
| Q |
64 |
attcaattactttgttttttaattctcatttgcccaacaatat |
106 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
35752210 |
attcaattactgtgctttttaattctcatatgcccaacaatat |
35752252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University