View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13329_low_1 (Length: 902)
Name: NF13329_low_1
Description: NF13329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13329_low_1 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 852; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 13 - 880
Target Start/End: Original strand, 24638325 - 24639192
Alignment:
| Q |
13 |
atcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgacctttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638325 |
atcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgacctttt |
24638424 |
T |
|
| Q |
113 |
ccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638425 |
ccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaa |
24638524 |
T |
|
| Q |
213 |
agtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638525 |
agtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcagaaaccatattagcaacacctctgtatccggcttctgca |
24638624 |
T |
|
| Q |
313 |
ctggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638625 |
ctggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggac |
24638724 |
T |
|
| Q |
413 |
atccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24638725 |
atccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccctgaacataacacatgat |
24638824 |
T |
|
| Q |
513 |
gcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatac |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638825 |
gcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgtagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatac |
24638924 |
T |
|
| Q |
613 |
tggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaag |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638925 |
tggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaag |
24639024 |
T |
|
| Q |
713 |
gtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaa |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639025 |
gtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaa |
24639124 |
T |
|
| Q |
813 |
gaagtaactcagtggaccataatccttcatagctaactcagaacaaggagtgtcatgatggatttctg |
880 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24639125 |
gaagtaactcagtggaccataatccttcatagctaactcagaacaaggagtttcatgatggatttctg |
24639192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 13 - 665
Target Start/End: Original strand, 24647254 - 24647906
Alignment:
| Q |
13 |
atcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgacctttt |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647254 |
atcatcaaaaagaactcaaagtaggcctttgtgaagatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgacctttt |
24647353 |
T |
|
| Q |
113 |
ccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647354 |
ccagaacaaagtgaatatccatctcaatatgtttagtacgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaa |
24647453 |
T |
|
| Q |
213 |
agtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647454 |
agtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcagaaaccatattagcaacacctctgtatccggcttctgca |
24647553 |
T |
|
| Q |
313 |
ctggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggac |
412 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24647554 |
ctggattgagaaagtgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacacacaatagacggaagtagaatgacaggtgtcaagac |
24647653 |
T |
|
| Q |
413 |
atccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24647654 |
atccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccctgaacataacacatgat |
24647753 |
T |
|
| Q |
513 |
gcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatac |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24647754 |
gcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaattaagatac |
24647853 |
T |
|
| Q |
613 |
tggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtc |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647854 |
tggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtc |
24647906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 33 - 877
Target Start/End: Original strand, 48099458 - 48100304
Alignment:
| Q |
33 |
gtaggcctttg-tgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatc |
131 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||| ||||||||||||| || |
|
|
| T |
48099458 |
gtaggcctttggtgaagatgtcagcaatctggtgacgagaaggaacatgaaggacgcgtgcctggccacgagctaccttttctcgaacaaagtgaatgtc |
48099557 |
T |
|
| Q |
132 |
catctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtggg |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||| ||| |||||| |||||| |||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
48099558 |
catctcaatatgtttagtgcgctgatgttgtactggattaccagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtggg |
48099657 |
T |
|
| Q |
232 |
tagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgg |
331 |
Q |
| |
|
| |||| ||||||||||| || |||||||||||||||||| | |||| |||||||||||| ||||| | ||||||||||| ||| | ||||| |||| |
|
|
| T |
48099658 |
aaatgaagttccaagagaaggttacgaagccaacaagattcagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgg |
48099757 |
T |
|
| Q |
332 |
gttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatcaccatc |
431 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||||| ||||||| | || |||||| ||| |||||| |||||||||||||||||| |||| |
|
|
| T |
48099758 |
gttgtcgcttggaagaccaggagatgaggttgtcaccaagaaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatcagcatc |
48099857 |
T |
|
| Q |
432 |
agtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatgcgtttgagggcaagcatg |
531 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| ||| | ||||||| | |||||||||||||||||||||| |
|
|
| T |
48099858 |
agtataggagataagtttctcaatacgggatggataaagatgcaaaccatagtgtaaggtgccctgcacataacgtaggatgcgtttgagggcaagcatg |
48099957 |
T |
|
| Q |
532 |
tggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagac |
631 |
Q |
| |
|
|||| || ||||||||||||||| |||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
48099958 |
tggtcggtgcaaggggcatgcatgtgaagacacacctgctgaacaacataagaaatgtcaggacgggtgaaagtaagatactgcaaggctcctgcaagac |
48100057 |
T |
|
| Q |
632 |
tccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcc |
731 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48100058 |
tccgatataaggtggggtcatcgtatggagtgccagcggaggtactgagcttctgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcc |
48100157 |
T |
|
| Q |
732 |
tgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggacca |
831 |
Q |
| |
|
||| || ||||| || ||| | |||| ||||| ||||| || || | | | | ||||||| ||||| |||||||||| || |||||||||||||| |
|
|
| T |
48100158 |
tgcgcgggcaatgatttcaccaacatagatactctgactaaggaaaatcccaccaacatgtctagtcacggcaatgcccaaaaaataactcagtggaccc |
48100257 |
T |
|
| Q |
832 |
taatccttcatagctaactcaga-acaaggagtgtcatgatggattt |
877 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
48100258 |
agatccttcatagcaaactcagaggcaaggagtgccatgatggattt |
48100304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 728
Target Start/End: Complemental strand, 20620697 - 20619996
Alignment:
| Q |
16 |
atcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttcc |
114 |
Q |
| |
|
||||||| |||||| | || |||||||| ||| ||||||||||||||| ||||||||||||||||||||||| | ||||| ||| || | ||||||| |
|
|
| T |
20620697 |
atcaaaaagaactcgaggttggcctttggtgaagatgtcagcaatctgatgacgagaaggaacatgaaggacgcgtgccttgtcacccacggccttttct |
20620598 |
T |
|
| Q |
115 |
agaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaag |
214 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| | ||||||| || ||||||| ||| ||| ||||||| | |||||||||| || ||| |||||| |
|
|
| T |
20620597 |
caaacaaatagaatgtccatctcaatatgtttagtacgttgatgtttcattggattagcagaaagctagatggaagtaacattatcgcagtactccaaag |
20620498 |
T |
|
| Q |
215 |
tagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcact |
314 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||||||||||||||||||||| || ||| |||||| ||| |||| ||||||||| | |
|
|
| T |
20620497 |
gagcctgggaaagtgggtagtgaaactctaagagaagattgcgaagccaacacgactcagaaaccacatt------------gtatttagcttctgcatt |
20620410 |
T |
|
| Q |
315 |
ggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacat |
414 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| ||||||| | || || ||| || |||||||||||| |
|
|
| T |
20620409 |
ggagcaagaaagcgtgggttgtcgtttgaaagatcatgaaatgaggttgtcaccaagaaacacacaatagccagaggtcgaacaacgagtgtcaggacat |
20620310 |
T |
|
| Q |
415 |
ccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatgc |
514 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
20620309 |
ccaccccaatcagcatcagtgtaggagataagtttctcaataggggatggatagagatgcaaaccatagtgtagggtgcccagaacataacacatgatgc |
20620210 |
T |
|
| Q |
515 |
gtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactg |
614 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| ||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20620209 |
gtttgagggcaagcatgtggtcggtgcaaggggcatgcatgtgaagacacatctgttggccaacataagagatgtcaggtcgggtgaaagtaagatactt |
20620110 |
T |
|
| Q |
615 |
gaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggt |
714 |
Q |
| |
|
||| |||||||||||| |||||| | |||||||| | |||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
20620109 |
caaggatcctgcaagacttcgatataaagtgggatcgttatatgaagtgttgacggtggtactgagcttctgtttggtgtcaactgtagtagcaaaaggt |
20620010 |
T |
|
| Q |
715 |
ttgcatgaggccat |
728 |
Q |
| |
|
| || |||||||| |
|
|
| T |
20620009 |
tcacacgaggccat |
20619996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 29074145 - 29074293
Alignment:
| Q |
67 |
cgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatg |
166 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| || |||||| | ||||||||||| |||||| |||||| || ||| |||||||||| | | |
|
|
| T |
29074145 |
cgagaaggaacatgaagtatgcatgcctgaccacgagctactttttcccgtacaaagtgaatctccatcacaatatacttggtacgctgatgttgtacag |
29074244 |
T |
|
| Q |
167 |
gattaacagcaaggtagatggcattaacattatcacaatacaccaaagt |
215 |
Q |
| |
|
||||| ||| ||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
29074245 |
gattaccagagaggtagatgacactaacattgtcacaatacaccaaagt |
29074293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 878
Target Start/End: Complemental strand, 44387608 - 44386742
Alignment:
| Q |
13 |
atcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttt |
111 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||| ||| ||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
44387608 |
atcatcaaaaagaactcgaggtaggactttggtgaagatgtgagcaatctgatgacgagaaggaacatgaaggacacgtgcctggccacgcacgaccttt |
44387509 |
T |
|
| Q |
112 |
tccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacacca |
211 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||| | ||||| |||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44387508 |
tcc-gaacaaagtgaatgtccatctcaatatgtttagtacgttgatgctgcactggattaccagaaaggtagatggcactaacattatcacaatacacca |
44387410 |
T |
|
| Q |
212 |
aagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgc |
311 |
Q |
| |
|
|| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||| | || |||||||| |
|
|
| T |
44387409 |
aactagtctgggaaagtgggtagtgaagctctaagagaagattgcgaagccaacatgattcagaaaccacattagcaacacccatatacttagcttctgc |
44387310 |
T |
|
| Q |
312 |
actggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcagga |
411 |
Q |
| |
|
||| ||| |||||| ||||||||||||||||||||||| || | ||||||||||||||||||| ||||||| | | || ||| ||| |||||||||| |
|
|
| T |
44387309 |
acttgagcaagaaagtgtgggttgtcgtttggaagaccaagaaatgaggttgtcaccaagaaacacacaatagccagcggtcgaacgacgggtgtcagga |
44387210 |
T |
|
| Q |
412 |
catccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatga |
511 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||| || ||||||||| || || |
|
|
| T |
44387209 |
catccaccccaatcagcatcagtgtaggagataagtttctcaataggagatagatagagatgcaaaccatagtgtagggtgccttgaacataacgcagga |
44387110 |
T |
|
| Q |
512 |
tgcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagata |
611 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||| |||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
44387109 |
tgcgtttgagggcaagcatgtggtcggtgcaaagggcgtgcatgtgaagacacacctgttggacaacataagatatgtcaggtcgggtgaaagtaagata |
44387010 |
T |
|
| Q |
612 |
ctggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaa |
711 |
Q |
| |
|
||| ||| ||||||||||||| |||||| | |||||||| || ||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
44387009 |
ctgcaaggctcctgcaagacttcgatataaagtgggatcgtcatatgaagtgccggcggtggtactgagcttttgtttggtgtcaactggagtagcagaa |
44386910 |
T |
|
| Q |
712 |
ggtttgcatgaggccatgcctgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgccca |
811 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |||| || ||||| |||| | | ||||| | ||||| |||||||| |
|
|
| T |
44386909 |
ggtttgcacgaggccatgcctgctcgagcaataatatcactagcataggtactctggctgaggaagagtccaccatcatgtttagtcacggaaatgccca |
44386810 |
T |
|
| Q |
812 |
agaagtaactcagtggaccataatccttcatagctaactcaga-acaaggagtgtcatgatggatttc |
878 |
Q |
| |
|
| || |||||||||||||| ||||||| || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
44386809 |
aaaaataactcagtggacccaaatccttaatggcaaactcagatgcaaggagtgtcatgatggatttc |
44386742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 33 - 877
Target Start/End: Original strand, 9932176 - 9933022
Alignment:
| Q |
33 |
gtaggcctttg-tgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatc |
131 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||| ||||||||||||| || |
|
|
| T |
9932176 |
gtaggcctttggtgaagatgtcagcaatctggtgacgagaaggaacatgaaggacgcgtgcctggccacgagctaccttttctcgaacaaagtgaatgtc |
9932275 |
T |
|
| Q |
132 |
catctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtggg |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||| ||| |||||| |||||| |||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
9932276 |
catctcaatatgtttagtgcgctgatgttgtactggattaccagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtggg |
9932375 |
T |
|
| Q |
232 |
tagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgg |
331 |
Q |
| |
|
| |||| ||||||||||| || |||||||||||||||||| | |||| |||||||||||| ||||| | ||||||||||| ||| | ||||| |||| |
|
|
| T |
9932376 |
aaatgaagttccaagagaaggttacgaagccaacaagattcagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgg |
9932475 |
T |
|
| Q |
332 |
gttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatcaccatc |
431 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||||| ||||||| | || |||||| ||| |||||| |||||||||||||||||| |||| |
|
|
| T |
9932476 |
gttgtcgcttggaagaccaggagatgaggttgtcaccaagaaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatcagcatc |
9932575 |
T |
|
| Q |
432 |
agtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatgcgtttgagggcaagcatg |
531 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| ||| | ||||||| | |||||||||||||||||||||| |
|
|
| T |
9932576 |
agtataggagataagtttctcaatacgggatggataaagatgcaaaccatagtgtaaggtgccctgcacataacgtaggatgcgtttgagggcaagcatg |
9932675 |
T |
|
| Q |
532 |
tggttagtacaaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagac |
631 |
Q |
| |
|
|||| || ||||||||||||||| ||| |||||||||| | ||| ||||||| || ||||| |||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
9932676 |
tggtcggtgcaaggggcatgcatgtgaatacacacctgctgaacagcataagaaatatcaggacgggtgaaagtaagatactgcaaggctcctgcaagac |
9932775 |
T |
|
| Q |
632 |
tccgatatcaggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcc |
731 |
Q |
| |
|
|||||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9932776 |
tccgatataaggtggggtcatcatatggagtgtcagcggaggtactgagcttctgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcc |
9932875 |
T |
|
| Q |
732 |
tgctcgagcaataatgccactagcataaatactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggacca |
831 |
Q |
| |
|
||| || ||||| || ||| |||||| ||||| ||||| || || | | | | ||||||| ||||| |||||||||| || |||||||||||||| |
|
|
| T |
9932876 |
tgcgcgggcaatgatttcaccagcatagatactctgactaaggaaaatcccaccaacatgtctagtcacggcaatgcccaaaaaataactcagtggaccc |
9932975 |
T |
|
| Q |
832 |
taatccttcatagctaactcaga-acaaggagtgtcatgatggattt |
877 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
9932976 |
agatccttcatagcaaactcagaggcaaggagtgccatgatggattt |
9933022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 55 - 425
Target Start/End: Complemental strand, 45029975 - 45029605
Alignment:
| Q |
55 |
gcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgct |
154 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| | |||||||||||| || |||||| | |||||||| || ||||| ||||| ||||| ||| | | |
|
|
| T |
45029975 |
gcaatctgatgtcgagatggaacatggaggacgcgtgcctgaccacgagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgtt |
45029876 |
T |
|
| Q |
155 |
gatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagatt |
254 |
Q |
| |
|
|||| |||| || || ||| |||||||||||| ||||||| ||||||||||||||||||||||| | || || || | ||||||| | ||||| |
|
|
| T |
45029875 |
gatgctgcacagggttgccagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagatt |
45029776 |
T |
|
| Q |
255 |
gcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgat |
354 |
Q |
| |
|
||||||||||| || ||| | || | ||||||||||||||| ||| | ||||| ||||| || |||| || |||||||||| ||||| ||||| | |
|
|
| T |
45029775 |
acgaagccaacatgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcg |
45029676 |
T |
|
| Q |
355 |
gtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatc |
425 |
Q |
| |
|
| ||||||||||| ||||| | ||| || | ||||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
45029675 |
atgaggttgtcaccgagaaagacacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatc |
45029605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 55 - 425
Target Start/End: Complemental strand, 45034826 - 45034456
Alignment:
| Q |
55 |
gcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgct |
154 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| | |||||||||||| || |||||| | |||||||| || ||||| ||||| ||||| ||| | | |
|
|
| T |
45034826 |
gcaatctgatgtcgagatggaacatggaggacgcgtgcctgaccacgagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgtt |
45034727 |
T |
|
| Q |
155 |
gatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagatt |
254 |
Q |
| |
|
|||| |||| || || | | |||||||||||| ||||||| ||||||||||||||||||||||| | || || || | ||||||| | ||||| |
|
|
| T |
45034726 |
gatgctgcacagggttgccggataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagatt |
45034627 |
T |
|
| Q |
255 |
gcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgat |
354 |
Q |
| |
|
||||||||||| || ||| | || | ||||||||||||||| ||| | ||||| ||||| || |||| || |||||||||| ||||| ||||| | |
|
|
| T |
45034626 |
acgaagccaacatgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcg |
45034527 |
T |
|
| Q |
355 |
gtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatc |
425 |
Q |
| |
|
| ||||||||||| ||||| | ||| || | ||||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
45034526 |
atgaggttgtcaccgagaaagacacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatc |
45034456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 109 - 425
Target Start/End: Complemental strand, 24210144 - 24209828
Alignment:
| Q |
109 |
ttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaataca |
208 |
Q |
| |
|
|||||| | |||||||| || ||||| ||||| ||||| ||| | ||||| |||| || || ||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
24210144 |
ttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgttgatgctgcacagggttgccagataggtagatggcactaacattgtcacaataca |
24210045 |
T |
|
| Q |
209 |
ccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttc |
308 |
Q |
| |
|
||||||||||||| | || || || | ||||||| | ||||| ||||||||||| || ||| | || | ||||||||||||||| ||| | ||||| |
|
|
| T |
24210044 |
ccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagccaacatgactcagacacaacattagcaacacctctatattccgcttc |
24209945 |
T |
|
| Q |
309 |
tgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtca |
408 |
Q |
| |
|
||||| || |||| || |||||||||| ||||| ||||| | | ||||||||||| ||||| | ||| || | ||||| ||| | | ||||||| |
|
|
| T |
24209944 |
agcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgagaaagacacagtatccagaagtggaacgtcgggtgtca |
24209845 |
T |
|
| Q |
409 |
ggacatccaccccaatc |
425 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24209844 |
ggacatccaccccaatc |
24209828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 7324509 - 7324652
Alignment:
| Q |
240 |
ctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgt |
339 |
Q |
| |
|
|||||| || || ||||| | ||||||||| ||| | || | ||| |||||||||| |||| ||||||| ||||| ||| |||| | |||||||| ||| |
|
|
| T |
7324509 |
ctccaaaagtaggttgcgtaaccaacaagactcagatacgacattggcaacacctcggtattcggcttcagcactagagcgagataatgtgggttggcgt |
7324608 |
T |
|
| Q |
340 |
ttggaagaccatgatgtaaggttgtcaccaagaaacatacaata |
383 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | |||||| |
|
|
| T |
7324609 |
ttggaagaccatgagagtagattgtcaccaagaaatacacaata |
7324652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 30332361 - 30332255
Alignment:
| Q |
247 |
agaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaag |
346 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| | |||||||||||| | || | ||||||||||| || ||||||| || ||||||||||| | || |
|
|
| T |
30332361 |
agaagatttcgaagccaacaagattctgaaacaacattagcaacaccacgatactccgcttctgcactagaacgagaaagagttggttgtcgtttagcag |
30332262 |
T |
|
| Q |
347 |
accatga |
353 |
Q |
| |
|
||||||| |
|
|
| T |
30332261 |
accatga |
30332255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 23584262 - 23583737
Alignment:
| Q |
8 |
tggacatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatga |
106 |
Q |
| |
|
|||| |||||||||| |||| | | |||| |||||| ||| || | |||||||||||||||||||||||||||||||||| | |||||| ||||| || |
|
|
| T |
23584262 |
tggaaatcatcaaaaagaacacgaggtagacctttggtgaagacgacagcaatctggtgacgagaaggaacatgaaggacgcgtgcctggccacgagcga |
23584163 |
T |
|
| Q |
107 |
ccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaata |
206 |
Q |
| |
|
||||| | ||||||||||||| ||||||||||||||||||| | | |||||| | ||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
23584162 |
cctttcctcgaacaaagtgaatgtccatctcaatatgtttagcgcgtt-atgttgtactggattacgagaaaggtagatggcactaacattatcacaata |
23584064 |
T |
|
| Q |
207 |
caccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggct |
306 |
Q |
| |
|
|||||| |||||||| || |||||| | |||||||||||||||| ||||||| ||||||||||||| | |||| |||||||||||| ||||| | ||| |
|
|
| T |
23584063 |
caccaaggtagcctgagagagtgggaaatgaagctccaagagaaggttgcgaaaccaacaagattcagataccacattagcaacacccctgtactcagct |
23583964 |
T |
|
| Q |
307 |
tctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgt |
406 |
Q |
| |
|
| |||||| || ||||||| |||||||||| ||||||||||| || | ||||| ||||||||||| | ||||||| | ||||||||| ||| ||||| |
|
|
| T |
23583963 |
tttgcactagaccgagaaagtgtgggttgtctcttggaagaccaggaaatgaggttatcaccaagaaatacacaatagccagaagtagaacgacgggtgt |
23583864 |
T |
|
| Q |
407 |
caggacatccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataaca |
506 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
23583863 |
caggacatccacccgaatcagcatcagtataggagataagtttctcaatagggaatggatagagatgcaaaccatagtgtagggtgccctgaacataatg |
23583764 |
T |
|
| Q |
507 |
catgatgcgtttgagggcaagcatgtg |
533 |
Q |
| |
|
|| |||||||||||| ||||||||||| |
|
|
| T |
23583763 |
caagatgcgtttgagagcaagcatgtg |
23583737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 551 - 746
Target Start/End: Complemental strand, 23583743 - 23583548
Alignment:
| Q |
551 |
gcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatcaggtgggatc |
650 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||| ||| |||| ||||||| | ||| |||||||||| |
|
|
| T |
23583743 |
gcatgtgaagacacacctgttgaacaacataagagatgtgaggacgggtgaaagtaagatactgcaaggctcccacaagacttcaatacaaggtgggatc |
23583644 |
T |
|
| Q |
651 |
atcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
746 |
Q |
| |
|
||||||| |||| | | |||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
23583643 |
gtcgtatggagtgccgatagaggtaacgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgaggccatgcctgctcgggcaataat |
23583548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 43 - 446
Target Start/End: Original strand, 40270443 - 40270846
Alignment:
| Q |
43 |
gtgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatat |
142 |
Q |
| |
|
|||| ||||||||| ||||| || | || |||||||||||||| | ||||||||||| |||||||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
40270443 |
gtgaagatgtcagcgatctgatgtcttgagggaacatgaaggacgcgagcctgaccacgagcgaccttttcccgaacaaaatgaatgttcatctcaatat |
40270542 |
T |
|
| Q |
143 |
gtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctc |
242 |
Q |
| |
|
||||| | ||||||| |||| |||||| ||| || ||||||||| ||||||| ||| ||||||||||||| ||||| || || | | || || |
|
|
| T |
40270543 |
gtttaatgcgctgatgctgcacaggattaccagatagatagatggcactaacattgtcataatacaccaaagtggcctgatgaataggaaaatggagttc |
40270642 |
T |
|
| Q |
243 |
caagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttg |
342 |
Q |
| |
|
|| ||||||||||||| |||||| |||||| | || | ||| ||||||||||| ||| | ||||| ||||| || | || || || || || |||||| |
|
|
| T |
40270643 |
cagaagaagattgcgaatccaacacgattcagagacaacatttgcaacacctctatattcagcttcagcactagaacgggagagagttggctgccgtttg |
40270742 |
T |
|
| Q |
343 |
gaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatcaccatcagtatagaaga |
442 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| | |||||| | || |||||| | | ||||||||||||||||||||||||| | ||||| ||| ||| |
|
|
| T |
40270743 |
gaagaccaagaaataaggttgtcacctagaaaaacacaataaccagatgtagaacgtctggtgtcaggacatccaccccaatcagcgtcagtgtaggaga |
40270842 |
T |
|
| Q |
443 |
taag |
446 |
Q |
| |
|
|||| |
|
|
| T |
40270843 |
taag |
40270846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 31343239 - 31343149
Alignment:
| Q |
73 |
ggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgca |
163 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||| ||||||| ||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31343239 |
ggaacatgaagtacacatgcttgaccacgagctactttttcccgaacaaaatgaatgtccatctcaatatgtttggtacgctgatgttgca |
31343149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 32307300 - 32307406
Alignment:
| Q |
247 |
agaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaag |
346 |
Q |
| |
|
||||| || |||||||||||||||||| |||| | |||||||||||| | || | ||||||||||| || ||||||| || ||||||||||||| || |
|
|
| T |
32307300 |
agaaggtttcgaagccaacaagattcagaaacaacattagcaacaccacgatactccgcttctgcactagaacgagaaagagttggttgtcgtttggcag |
32307399 |
T |
|
| Q |
347 |
accatga |
353 |
Q |
| |
|
||||||| |
|
|
| T |
32307400 |
accatga |
32307406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 19183603 - 19183449
Alignment:
| Q |
43 |
gtgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatat |
142 |
Q |
| |
|
|||| |||||| ||||||||||| | || |||| ||| || ||||||||||||||||| || |||||| ||||||| ||||| || |||| ||| | |
|
|
| T |
19183603 |
gtgaagatgtctgcaatctggtgtcttgagggaatatgtagaacacatgcctgaccacgagctactttttcccgaacaaaatgaatgtctatcttaatgt |
19183504 |
T |
|
| Q |
143 |
gtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacatt |
197 |
Q |
| |
|
|||| ||| ||||| |||| |||||| ||| |||||||||||| ||||||| |
|
|
| T |
19183503 |
gtttggtacactgatactgcacaggattaccagataggtagatggcactaacatt |
19183449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 560 - 877
Target Start/End: Original strand, 21877278 - 21877596
Alignment:
| Q |
560 |
gacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatcaggtgggatcatcgtatga |
659 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || |||| || |||| |||| ||||| |||||| |||||||||||| |
|
|
| T |
21877278 |
gacacacctaccggacgacataagagatatcaggccgggtgaaagtaagatattgcaagaatcttgcagaactctgatataaggtggtatcatcgtatga |
21877377 |
T |
|
| Q |
660 |
agtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataatgccactagcataa |
759 |
Q |
| |
|
|||| || | ||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||||| || |||||||||||| | ||||||||||| |
|
|
| T |
21877378 |
agtgacatcagtggtactgagtttttgcttggttacaactggagtagcagaaggtttgcacaaggccatgtctactcgagcaataaagtcactagcataa |
21877477 |
T |
|
| Q |
760 |
atactttgactgagtaagaacttgcgagcatgtctggtcacaacaatgcccaagaagtaactcagtggaccataatccttcatagctaactcaga-acaa |
858 |
Q |
| |
|
||||| ||||| | || | | | | ||||||||||||||| | | |||||| ||||||||||| |||||| |||||||||||| |||||||| ||| |
|
|
| T |
21877478 |
atactctgactagggaaaatcctaccagcatgtctggtcacgaaagtgcccaggaagtaactcaatggacccaaatccttcatagtaaactcagaggcaa |
21877577 |
T |
|
| Q |
859 |
ggagtgtcatgatggattt |
877 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
21877578 |
gtagtgccatgatggattt |
21877596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 469 - 638
Target Start/End: Original strand, 22207940 - 22208109
Alignment:
| Q |
469 |
agatgcaaaccgtagtgtagggttccccgaacataacacatgatgcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacct |
568 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||| || |||| ||||||| | ||||| ||||| || ||||||| ||||||| ||||| |||||| |
|
|
| T |
22207940 |
agatgcaaaccatagtacagggttcccttaacataatgcaagatgtgtttgagagtaagcacgtggtcggtgcaaggggtatgcatgtgaagatacacct |
22208039 |
T |
|
| Q |
569 |
gccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgata |
638 |
Q |
| |
|
| | |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22208040 |
gttgaacaacataagagatgtcaggatgggtgaaagtaagatactgcaaggctcctgcaagactccgata |
22208109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 43 - 704
Target Start/End: Complemental strand, 16594863 - 16594202
Alignment:
| Q |
43 |
gtgatgatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatat |
142 |
Q |
| |
|
|||| |||||| ||||| || || | ||| |||||||||||||| | ||||| ||||| |||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
16594863 |
gtgaagatgtctgcaatttgatgtctagagggaacatgaaggacgcgagcctggccacgagcgaccttttcccgaacaaaatgaatgtccatctcaatat |
16594764 |
T |
|
| Q |
143 |
gtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctc |
242 |
Q |
| |
|
| ||||| ||||||| |||| |||||| ||| || ||||||||| ||||||| ||||||||||||||||| |||| | || || | | || || |
|
|
| T |
16594763 |
gcttagtgcgctgatgctgcacaggattaccagatagatagatggcactaacattgtcacaatacaccaaagtggcctcaggaataggaaaatggagttc |
16594664 |
T |
|
| Q |
243 |
caagagaagattgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttg |
342 |
Q |
| |
|
| |||||||||||||| |||||| ||||| |||| | ||| ||||| || || ||| ||||||| ||||| || | || || || ||||| | |||| |
|
|
| T |
16594663 |
taggagaagattgcgaatccaacacgattcggaaacaacatttgcaactcccctatattcggcttcagcactagaacgggagagagtaggttgccttttg |
16594564 |
T |
|
| Q |
343 |
gaagaccatgatgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatcaccatcagtatagaaga |
442 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| | ||| || | || ||||| | | |||||||||||||||||||||||| | ||||| ||| ||| |
|
|
| T |
16594563 |
gaagaccaagaaataaggttgtcacctagaaaaacacagtaaccagatgtagaccgtctagtgtcaggacatccaccccaatcagcgtcagtgtaggaga |
16594464 |
T |
|
| Q |
443 |
t-aagtttctcaataggggatggatagagatgcaaaccgtagtgtagggttccccgaacataacacatgatgcgtttgagggcaagcatgtggttagtac |
541 |
Q |
| |
|
| || ||| | |||||| ||||| | | ||| || || | |||| ||| ||| ||||||| | || | ||| ||||| || |||||||| | || | |
|
|
| T |
16594463 |
tcaactttgt-aataggagatggtgataaatgtaatccaaaatgtaaggtgccctgaacatagcgcagaacgcgcttgagagccagcatgtgttccgtgc |
16594365 |
T |
|
| Q |
542 |
aaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatca |
641 |
Q |
| |
|
|||||||||||| ||||||| || ||| | ||| |||| || | |||||| || ||||| || ||||||| || | | ||||||||||||||||| | |
|
|
| T |
16594364 |
gaggggcatgcatatgaagacaaacttgctgaacagcatatgataagtcaggtcgagtgaaggtgagatactagagggcccctgcaagactccgatacaa |
16594265 |
T |
|
| Q |
642 |
ggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagt |
704 |
Q |
| |
|
|| ||||| || || |||||| | | || ||| ||||| |||||| |||||||||| ||||| |
|
|
| T |
16594264 |
ggaaggatcctcataagaagtgccggaggaggtgctgagtttctgcttggtgtcaacaggagt |
16594202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 55 - 425
Target Start/End: Complemental strand, 33166216 - 33165844
Alignment:
| Q |
55 |
gcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgct |
154 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||||| |||||||||||| || |||||| | |||||||| || ||||| ||||| ||||| ||| | | |
|
|
| T |
33166216 |
gcaatctgatgtcgagatggaacatggaggacacgtgcctgaccacgagctactttttcccgtacaaagtgtatgtccatttcaatgtgtttggtacgtt |
33166117 |
T |
|
| Q |
155 |
gatgt--tgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaaga |
252 |
Q |
| |
|
||| | |||| || || ||| |||||||||||| ||||||| ||||||||||||||||||||||| | || || || | |||||| | ||| |
|
|
| T |
33166116 |
gatatgctgcacagggttgccagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctcctgtaagaga |
33166017 |
T |
|
| Q |
253 |
ttgcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatg |
352 |
Q |
| |
|
|| ||||||||||| || ||| | || | ||||||||||||||| ||| | ||||| ||||| || |||| || |||||||||| ||||| ||||| | |
|
|
| T |
33166016 |
ttacgaagccaacatgactcagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaag |
33165917 |
T |
|
| Q |
353 |
atgtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatc |
425 |
Q |
| |
|
| ||||||||||| ||||| | ||| || | ||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
33165916 |
cgatgaggttgtcaccgagaaagacacagtatccagaagtggaacgtcaggtgtcaggacatccaccccaatc |
33165844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 22207719 - 22207868
Alignment:
| Q |
68 |
gagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatgg |
167 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||||||| | ||||| || | || |
|
|
| T |
22207719 |
gagaaggaacatgaaggatgtgtgcctggccacgagcgaccttttctcgaacaaagtgaatgtccatctcaacatgtttagtgcgttgatgatgtactga |
22207818 |
T |
|
| Q |
168 |
attaacagcaaggtagatggcattaacattatcacaatacaccaaagtag |
217 |
Q |
| |
|
|||| || ||| |||||| || ||| |||||||||||| |||||||||| |
|
|
| T |
22207819 |
attaccaaaaagatagatgtcactaatattatcacaatataccaaagtag |
22207868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 746
Target Start/End: Original strand, 22208132 - 22208206
Alignment:
| Q |
672 |
ggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctgctcgagcaataat |
746 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |||||||||||| ||||| ||||||| || |||||||| |
|
|
| T |
22208132 |
ggtactgagcttttgtttggtgtcaattggagtagtagaaggtttgcacgaggcgatgcctgtgcgggcaataat |
22208206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 55 - 426
Target Start/End: Complemental strand, 41002 - 40631
Alignment:
| Q |
55 |
gcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgct |
154 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || | ||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||| ||| ||| |
|
|
| T |
41002 |
gcaatctgatgtcgagagggaacatgaagtacgcgtgcctgaccacaggctaccttttcccgtacaaagtgaatgtccatttcaatatgtttggtacgct |
40903 |
T |
|
| Q |
155 |
gatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagatt |
254 |
Q |
| |
|
||||||||| |||||| ||| || || |||||| ||||||| ||||||||||||||||| ||||| | || || | |||||||||| | ||| || |
|
|
| T |
40902 |
gatgttgcacaggattaccagagagataaatggcactaacattgtcacaatacaccaaagtggcctgaggaataggaaaatgaagctccaataaaaggtt |
40803 |
T |
|
| Q |
255 |
gcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgat |
354 |
Q |
| |
|
|||| |||||| || ||| | || | ||||||||||||||| ||| ||||||| |||||||||||||| || ||||| || | |||||||||||| || |
|
|
| T |
40802 |
acgaatccaacatgactcagatacaacattagcaacacctctatattcggcttcagcactggagtgagagagagtgggctgccttttggaagaccaagag |
40703 |
T |
|
| Q |
355 |
gtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatca |
426 |
Q |
| |
|
||||||||||||||||||| | ||| || | || |||||| | | ||| |||||||||| |||||||||| |
|
|
| T |
40702 |
ataaggttgtcaccaagaaaaacacagtacccagatgtagaacgtcgggtatcaggacatctaccccaatca |
40631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 75 - 731
Target Start/End: Complemental strand, 32064 - 31408
Alignment:
| Q |
75 |
aacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaaca |
174 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||| || ||||||| |||| |||||| || |
|
|
| T |
32064 |
aacatgaaggacgcgagcctgaccacgagcaaccttttcccgaacaaaatgaatgtccatctcaatatgttttgtgcgctgatgctgcacaggattacca |
31965 |
T |
|
| Q |
175 |
gcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagattgcgaagccaacaagattcaa |
274 |
Q |
| |
|
| || ||||||||| ||||||| ||||||||||||||||| ||||| | || || | | || |||| ||||||||||||| | |||| |||||| |
|
|
| T |
31964 |
gatagatagatggcactaacattgtcacaatacaccaaagttgcctgaggaataggaaaatggagttccagaagaagattgcgaatctaacacgattcag |
31865 |
T |
|
| Q |
275 |
aaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgatgtaaggttgtcaccaagaaa |
374 |
Q |
| |
|
| | | ||| |||||||||| ||| | ||||| ||||| || || || || || || || | |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
31864 |
agataacatttgcaacacctcgatattcagcttcagcactagaatgggagagagttggctgccttttggaagaccaagaaataaggttgtcacctagaaa |
31765 |
T |
|
| Q |
375 |
catacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatcaccatcagtatagaagataagtttctcaataggggatggatagagatgc |
474 |
Q |
| |
|
| ||| || || || |||||| | | ||||||||||||||||||||||||| | ||||| ||| ||| ||| | ||| || ||||| | | ||| |
|
|
| T |
31764 |
aacacagtatacagatgtagaacgtctggtgtcaggacatccaccccaatcagcgtcagtgtaggagagaagctatgtaatgggagatggggataaatgt |
31665 |
T |
|
| Q |
475 |
aaaccgtagtgtagggttccccgaacataacacatgatgcgtttgagggcaagcatgtggttagtacaaggggcatgcatgcgaagacacacctgccgga |
574 |
Q |
| |
|
| || | |||| ||| ||| ||||||| | || ||||| || || ||||||||||| | || | ||||||||||||| ||||||| || ||| | | |
|
|
| T |
31664 |
agtccaaaatgtaaggtgccctgaacatagcgcaaaatgcgcttaagagcaagcatgtgttccgtgcgaggggcatgcatgtgaagacaaacttgctgaa |
31565 |
T |
|
| Q |
575 |
caacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatcaggtgggatcatcgtatgaagtgtcagcggtggt |
674 |
Q |
| |
|
|| |||| || |||||||| | ||||| || |||||||| | | | ||||||||||||||||| ||| | ||| || || ||| |||| | || ||| |
|
|
| T |
31564 |
cagcataggatatgtcaggttgagtgaaggtgagatactgtagggcccctgcaagactccgatacaaggaagtatcctcataagaaatgtcggaggaggt |
31465 |
T |
|
| Q |
675 |
actgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcc |
731 |
Q |
| |
|
||||| |||||| |||||||||| ||||| || |||||||| || || |||||||| |
|
|
| T |
31464 |
gctgagtttctgcttggtgtcaacaggagtggctgaaggtttacaggacgccatgcc |
31408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 55 - 374
Target Start/End: Original strand, 1586282 - 1586600
Alignment:
| Q |
55 |
gcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgct |
154 |
Q |
| |
|
|||||||| || ||||||||||||||||| || | |||||||||||| || |||||||| ||||||||||| ||||| |||||||| || ||| | | |
|
|
| T |
1586282 |
gcaatctgatgtcgagaaggaacatgaagtacgcgtgcctgaccacgagctac-ttttccagtacaaagtgaatgtccatttcaatatgattggtacgtt |
1586380 |
T |
|
| Q |
155 |
gatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagatt |
254 |
Q |
| |
|
||||||||| || ||| ||| || |||||| || ||||||| ||||||||||||||||| | || | || ||| | |||| |||| | |||||| |
|
|
| T |
1586381 |
gatgttgcacagggttaccagagagatagatgacactaacattgtcacaatacaccaaagtgccatgaggaatagggaaatgaagttccagtaaaagatt |
1586480 |
T |
|
| Q |
255 |
gcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgat |
354 |
Q |
| |
|
|||| ||||||||| ||| | || | ||||||||||||||| ||| | ||||| ||||| || ||||| || || ||||| | |||||||||||| || |
|
|
| T |
1586481 |
acgaatccaacaagactcatatacaacattagcaacacctctatattcagcttcagcactagactgagagagagtaggttgccttttggaagaccaagag |
1586580 |
T |
|
| Q |
355 |
gtaaggttgtcaccaagaaa |
374 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1586581 |
ataaggttgtcaccaagaaa |
1586600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 10260768 - 10260683
Alignment:
| Q |
118 |
acaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcaca |
203 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||| | ||||| ||| |||||||| ||| ||||||| ||||| |
|
|
| T |
10260768 |
acaaagtgaatgtccatctcaatatgcttagtacgctgatgttgtacaagattaccagagaggtagatagcactaacattgtcaca |
10260683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 55 - 445
Target Start/End: Original strand, 5733 - 6123
Alignment:
| Q |
55 |
gcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgct |
154 |
Q |
| |
|
|||||||| || ||||||||||||||||| || | ||||| |||||| || |||||| | ||||||||||| ||||| |||||||| || ||| | | |
|
|
| T |
5733 |
gcaatctgatgtcgagaaggaacatgaagtacgcgtgcctcaccacgagctactttttcccgtacaaagtgaatgtccatttcaatatgcttggtacgtt |
5832 |
T |
|
| Q |
155 |
gatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcctgggaaagtgggtagcgaagctccaagagaagatt |
254 |
Q |
| |
|
||||||||| ||||| ||| || |||||| || ||||||| ||||||||||||||||| || || | || ||| | |||| |||| | ||| || |
|
|
| T |
5833 |
gatgttgcacatgattaccagagagatagatgacactaacattgtcacaatacaccaaagtggcttgaggaatagggaaatgaagttccagtaaaaggtt |
5932 |
T |
|
| Q |
255 |
gcgaagccaacaagattcaaaaaccatattagcaacacctctgtatccggcttctgcactggagtgagaaagcgtgggttgtcgtttggaagaccatgat |
354 |
Q |
| |
|
| || |||||| || ||| | || | ||||||||||||||| ||| ||||||| |||| || |||| || ||||| || | |||||||||||| || |
|
|
| T |
5933 |
acaaatccaacatgactcagatacaacattagcaacacctctatattcggcttcaacactagaccgagagagagtgggctgccttttggaagaccaagag |
6032 |
T |
|
| Q |
355 |
gtaaggttgtcaccaagaaacatacaatagacggaagtagaatgacaggtgtcaggacatccaccccaatcaccatcagtatagaagataa |
445 |
Q |
| |
|
||||||||||||||||||| | |||||| | || ||||| | ||||||| ||||||||||||||||| | ||||| ||| |||||| |
|
|
| T |
6033 |
ataaggttgtcaccaagaaaaacacaataccgagctgtggaatgtctggtgtcaagacatccaccccaatcaacgtcagtgtaggagataa |
6123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 22332 - 22228
Alignment:
| Q |
116 |
gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagt |
215 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||| | ||||| ||| || || || ||| ||||||||||||||||||||||| | |
|
|
| T |
22332 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaact |
22233 |
T |
|
| Q |
216 |
agcct |
220 |
Q |
| |
|
||||| |
|
|
| T |
22232 |
agcct |
22228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 1853799 - 1853695
Alignment:
| Q |
116 |
gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagt |
215 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||| | ||||| ||| || || || ||| ||||||||||||||||||||||| | |
|
|
| T |
1853799 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaact |
1853700 |
T |
|
| Q |
216 |
agcct |
220 |
Q |
| |
|
||||| |
|
|
| T |
1853699 |
agcct |
1853695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 36650248 - 36650144
Alignment:
| Q |
116 |
gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagt |
215 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||| | ||||| ||| || || || ||| ||||||||||||||||||||||| | |
|
|
| T |
36650248 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaact |
36650149 |
T |
|
| Q |
216 |
agcct |
220 |
Q |
| |
|
||||| |
|
|
| T |
36650148 |
agcct |
36650144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 1545962 - 1546125
Alignment:
| Q |
48 |
gatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgttta |
147 |
Q |
| |
|
|||||| |||||||| || | || ||||||||||| || | ||||||||||| | || |||||| | ||||| ||||| ||||||||||||||||| |
|
|
| T |
1545962 |
gatgtctgcaatctgatgtctggagggaacatgaagtacgcgtgcctgaccaccgactactttttcccgtacaaaatgaatgtccatctcaatatgtttg |
1546061 |
T |
|
| Q |
148 |
gtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacacca |
211 |
Q |
| |
|
||| ||||||| ||| |||||| ||| || ||||||||| ||||||| |||||||| |||| |
|
|
| T |
1546062 |
gtacgctgatgctgcgcaggattaccagatagatagatggcactaacattgtcacaatatacca |
1546125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 7084902 - 7084806
Alignment:
| Q |
124 |
tgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaaagtagcct |
220 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| | ||||| ||| || || || ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7084902 |
tgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaactagcct |
7084806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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