View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13329_low_2 (Length: 455)

Name: NF13329_low_2
Description: NF13329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13329_low_2
NF13329_low_2
[»] chr8 (15 HSPs)
chr8 (1-436)||(39187974-39188409)
chr8 (214-339)||(3160317-3160445)
chr8 (66-141)||(2875793-2875868)
chr8 (214-339)||(2889284-2889412)
chr8 (214-339)||(3145450-3145578)
chr8 (66-141)||(2795862-2795937)
chr8 (66-128)||(3144920-3144982)
chr8 (214-339)||(2874610-2874736)
chr8 (66-141)||(3159501-3159576)
chr8 (71-156)||(4416030-4416116)
chr8 (212-301)||(4416877-4416966)
chr8 (66-103)||(2890311-2890348)
chr8 (363-435)||(3505289-3505361)
chr8 (246-339)||(2797416-2797511)
chr8 (68-104)||(3494363-3494399)
[»] chr7 (1 HSPs)
chr7 (363-435)||(43313404-43313475)
[»] chr4 (1 HSPs)
chr4 (363-435)||(34743855-34743926)
[»] chr3 (2 HSPs)
chr3 (363-435)||(21531666-21531737)
chr3 (363-435)||(35167607-35167678)


Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 39188409 - 39187974
Alignment:
Q  1 aataaagagaagatagaagctgctcataagaagaaagaaaaaggggaatcattgcactgacgtcgtgaatatgcaagagcttctaaaagatttgagaagg 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39188409 aataaagagaagtgagaagctgctcataagaagaaagaaaaaggggaatcattgcaccgacgtcgtgaatatgcaagagcttctaaaagatttgagaagg 39188310  T
Q  101 taaccaagttacattgatatatttcaccctcatccactacagtgcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188309 taaccaagttacattgatatatttcaccctcatccactacagtgcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaat 39188210  T
Q  201 cttgttagagttggttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188209 cttgttagagttggttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgc 39188110  T
Q  301 taatatctatcatttgataatatacaacattaccttgtttgtgtggcaagttgtatcatgtatcttaaactgaaaccataacgcaggctctaaagttcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188109 taatatctatcatttgataatatacaacattaccttgtttgtgtggcaagttgtatcatgtatcttaaactgaaaccataacgcaggctctaaagttcat 39188010  T
Q  401 agagaatgatatttccttcagtgatgaggagaagag 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  39188009 agagaatgatatttccttcagtgatgaggagaagag 39187974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 3160317 - 3160445
Alignment:
Q  214 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 313  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  3160317 gttaggagcatagtgctctctttaggagtctttgactctggtttatctctttcattctgttattccacccttgtagagcctctacactcatatttatcat 3160416  T
Q  314 ttga---taatatacaacattaccttgtt 339  Q
    ||||   |||||||||| |||||||||||    
T  3160417 ttgatagtaatatacaaaattaccttgtt 3160445  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 2875868 - 2875793
Alignment:
Q  66 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 141  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  2875868 tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatcatccactaca 2875793  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 214 - 339
Target Start/End: Complemental strand, 2889412 - 2889284
Alignment:
Q  214 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 313  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||||| || ||| ||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  2889412 gttaggagcatagtgctctctttaggagtctttgactctggtttatctatttcattctgttattccacccttgtagagcctctacactcatatttatcat 2889313  T
Q  314 ttga---taatatacaacattaccttgtt 339  Q
    ||||   |||||||||| |||||||||||    
T  2889312 ttgatagtaatatacaaaattaccttgtt 2889284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 3145450 - 3145578
Alignment:
Q  214 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 313  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||||| || ||| ||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  3145450 gttaggagcatagtgctctctttaggagtctttgactctggtttatctatttcattctgttattccacccttgtagagcctctacactcatatttatcat 3145549  T
Q  314 ttga---taatatacaacattaccttgtt 339  Q
    ||||   |||||||||| |||||||||||    
T  3145550 ttgatagtaatatacaaaattaccttgtt 3145578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 2795862 - 2795937
Alignment:
Q  66 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 141  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  2795862 tgaatatgcaagagcttctaaaagatatcagaaggtaaccatgttacattaatatatttcaccatcatccactaca 2795937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 3144920 - 3144982
Alignment:
Q  66 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcacc 128  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  3144920 tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcacc 3144982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 339
Target Start/End: Complemental strand, 2874736 - 2874610
Alignment:
Q  214 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 313  Q
    |||| |||||| ||||| | ||||||||||||||||| ||||||| ||||   ||| |||||||||||| ||||  |||||||||||| |||| ||||||    
T  2874736 gttatgagcatagtgctctctttaggagtctttgactctggtttatctctc--attctgttattccacccttgtatagcctctacgctcatatttatcat 2874639  T
Q  314 ttga---taatatacaacattaccttgtt 339  Q
    ||||   |||||||||| |||||||||||    
T  2874638 ttgatcgtaatatacaaaattaccttgtt 2874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 3159501 - 3159576
Alignment:
Q  66 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 141  Q
    |||||||||||||||||| || |||||| |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  3159501 tgaatatgcaagagcttccaagagatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactaca 3159576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 4416030 - 4416116
Alignment:
Q  71 atgcaagagcttctaaaagatttgagaaggtaaccaag-ttacattgatatatttcaccctcatccactacagtgcgttaggacact 156  Q
    ||||||| |||||||||||||||  |||||||||  || ||||||||||||||||||||||||||||||||| || | |||||||||    
T  4416030 atgcaagggcttctaaaagatttatgaaggtaactgaggttacattgatatatttcaccctcatccactacaatgtgataggacact 4416116  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 4416877 - 4416966
Alignment:
Q  212 tggttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgct 301  Q
    |||||||||| |  ||||| |||||||||||||| |||  ||||||| |||||| |||||||||||||| | |||| |||||||| ||||    
T  4416877 tggttaggagtagagtgctctgtttaggagtcttggaccctggtttatctctttcattttgttattccagcgttgtagagcctctgcgct 4416966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 2890348 - 2890311
Alignment:
Q  66 tgaatatgcaagagcttctaaaagatttgagaaggtaa 103  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2890348 tgaatatgcaagagcttctaaaagatttcagaaggtaa 2890311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 3505361 - 3505289
Alignment:
Q  363 tcttaaactgaaaccataacgcaggctctaaagttcatagagaatgatatttccttcagtgatgaggagaaga 435  Q
    |||| |||||||||||||| ||||||| ||||||  |||||| |||||| |||||| |||||| | |||||||    
T  3505361 tcttgaactgaaaccataatgcaggctttaaagtaaatagaggatgatacttcctttagtgatcatgagaaga 3505289  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 2797416 - 2797511
Alignment:
Q  246 tgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcatttga---taatatacaacattaccttgtt 339  Q
    ||||| ||||||| |||||| ||| |||||||||||| || | ||||||||||  | |||| ||||||||||   |||||||||| |||||||||||    
T  2797416 tgactctggtttatctctttcattctgttattccaccctt-tagagcctctacattcatatttatcatttgatggtaatatacaaaattaccttgtt 2797511  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 3494399 - 3494363
Alignment:
Q  68 aatatgcaagagcttctaaaagatttgagaaggtaac 104  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  3494399 aatatgcaaaagcttctaaaagatatgagaaggtaac 3494363  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 43313475 - 43313404
Alignment:
Q  363 tcttaaactgaaaccataacgcaggctctaaagttcatagagaatgatatttccttcagtgatgaggagaaga 435  Q
    |||||||||||| | |||| ||||||| ||||| |||||||| ||| || ||||||||||||||| |||||||    
T  43313475 tcttaaactgaa-caataatgcaggctgtaaagatcatagaggatggtacttccttcagtgatgatgagaaga 43313404  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 34743855 - 34743926
Alignment:
Q  363 tcttaaactgaaaccataacgcaggctctaaagttcatagagaatgatatttccttcagtgatgaggagaaga 435  Q
    |||||||||||| | |||| ||||||| ||||| |||||||| ||| || ||||||||||||||| |||||||    
T  34743855 tcttaaactgaa-caataatgcaggctgtaaagatcatagaggatggtacttccttcagtgatgatgagaaga 34743926  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 21531666 - 21531737
Alignment:
Q  363 tcttaaactgaaaccataacgcaggctctaaagttcatagagaatgatatttccttcagtgatgaggagaaga 435  Q
    |||||||||||| | |||| ||||||| ||||| |||||||| ||| || ||||||||||||||| |||||||    
T  21531666 tcttaaactgaa-caataatgcaggctgtaaagatcatagaggatggtacttccttcagtgatgatgagaaga 21531737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 35167607 - 35167678
Alignment:
Q  363 tcttaaactgaaaccataacgcaggctctaaagttcatagagaatgatatttccttcagtgatgaggagaaga 435  Q
    |||||||||||| | |||| ||||||| ||||| |||||||| ||| || ||||||||||||||| |||||||    
T  35167607 tcttaaactgaa-caataatgcaggctgtaaagatcatagaggatggtacttccttcagtgatgatgagaaga 35167678  T

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