View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13329_low_3 (Length: 444)
Name: NF13329_low_3
Description: NF13329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13329_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 3838397 - 3838816
Alignment:
| Q |
21 |
aactttccttatatctttgtatcccttagccattataatgcagtgcaaccttatcaaaattcataaatatttacactaaagaagagtcattacaaatttg |
120 |
Q |
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| T |
3838397 |
aactttccttatatctttgtatcccttagccattaaaatgcagtgcaaccttatcaaaattcataaatatttacactaaagaagagtcattacaaatttg |
3838496 |
T |
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| Q |
121 |
acatgatatgaatgatcatatataaactaagtcagttcttgcttggaggctaatgcacgataggctcccaactgatgagaagttacaagatagatgtagc |
220 |
Q |
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| T |
3838497 |
acatgatatgaatgatcatatataaactaagtcagttcttgcttggaggctaatgcacgataggctcccaactgatgagaagttacaagatagaggtagc |
3838596 |
T |
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| Q |
221 |
aatcttgcttccatctg---------tctcaattctgaggaaacaacatctcatcttttctttcagtgcccttttgcactgaaactttggaccgggcttg |
311 |
Q |
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| T |
3838597 |
aatcttgcttccatctgcagcatctttctcaattctgaggaaacaacatctcatcttttctttcagtgcccttttgcactgaaactttggacctggcttg |
3838696 |
T |
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| Q |
312 |
ccaatcttctaaatattaatcttcccgccattgataacatttggaagattggggagcaatttacacctcagtgcaggttagtttctaaggttgcagtcat |
411 |
Q |
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| T |
3838697 |
ctaatcttctcaatattaatcttcccgccattgataacatttggaagattggggagcaatttacacctcagtgcaggttagtttctaaggttgcagtcat |
3838796 |
T |
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| Q |
412 |
caacactatttccttcatct |
431 |
Q |
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| T |
3838797 |
caacactatttccatcatct |
3838816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 3825174 - 3825238
Alignment:
| Q |
67 |
aaccttatcaaaattcataaatatttacactaaagaagagtcattacaaatttgacatgatatga |
131 |
Q |
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| T |
3825174 |
aaccttatcaaaattcataaatatttatacttaaggagagccattacaaatttgacatgacatga |
3825238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 3825351 - 3825428
Alignment:
| Q |
67 |
aaccttatcaaaattcataaatattta--cactaaagaagagtcattacaaatttgacatgatatgaatgatcatata |
142 |
Q |
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||||||||||||||||||||||| ||| ||| ||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
3825351 |
aaccttatcaaaattcataaataattaaacaccgaaggagagccattactaatttgacatgatatgaatgatcatata |
3825428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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