View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13329_low_5 (Length: 295)
Name: NF13329_low_5
Description: NF13329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13329_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 18656522 - 18656253
Alignment:
| Q |
10 |
acatcatcatgaggttgaacaacataagaaatcatgaaactagaatttgttttggttttatcaggacacttacaaaaaataggaaacacaacattatcac |
109 |
Q |
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| T |
18656522 |
acattatcatgaggttgaacaacataagaaatcatgaaactagaatttgttttggttttatcaggacacttacaaaaaataggaaacacagcattatcac |
18656423 |
T |
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| Q |
110 |
caatagagagattagtagcaacaagattaggattaacaactccaacagaaggataagtagtgaggttttgaaagtttatagttgaaacaaggaagaaagt |
209 |
Q |
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| T |
18656422 |
caatagagagattagtagcaacaagattaggattaacaacttgaacagaaggataagtagtgaggttttggaagtttatagttgaaacaaggaaaaaggt |
18656323 |
T |
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| Q |
210 |
atcgtttggtttgatggtgtaagtgatgttggagtaagaaatggaaccaaaagtggtgttgatgaagttg |
279 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18656322 |
atcgtttggtttgatggtgtaagtgatgttagagtaagaaatggaaccaaaagtggtgttgatgaagttg |
18656253 |
T |
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