View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13329_low_8 (Length: 235)
Name: NF13329_low_8
Description: NF13329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13329_low_8 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 36940843 - 36941056
Alignment:
| Q |
6 |
tagtggaagatttcttattgaaaattgatagtagaatgagaaaagattacatcaagtgttggatacactttatgaagtgatcctaaataacctaacaaa- |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36940843 |
tagtggaagatttcttattgaaaattgatagtagaatgagaaaagattacatcaagtgttggatacactttatgaagtgatcctaactaacctaacaaaa |
36940942 |
T |
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| Q |
105 |
tgttgctaatctgtagtaattaatattaaccaacttataactatttagaaaattgatgtttacactattgtgaaggctaaaaaacaccataaaattcata |
204 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36940943 |
tgttactaatctgtagtaattaatattaaccaacttataactatttagaaaattgatgtttacactcttgtgaaggctaaaaaacaccataaaattcata |
36941042 |
T |
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| Q |
205 |
ggttatttggtatt |
218 |
Q |
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|||||||||||||| |
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| T |
36941043 |
ggttatttggtatt |
36941056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 41505849 - 41505802
Alignment:
| Q |
152 |
gaaaattgatgtttacactattgtgaaggctaaaaaacaccataaaat |
199 |
Q |
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| T |
41505849 |
gaaaattggtgtttacacttttgtaaaggctaagaaacaccataaaat |
41505802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 44686415 - 44686365
Alignment:
| Q |
150 |
tagaaaattgatgtttacactattgtgaaggctaa-aaaacaccataaaat |
199 |
Q |
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| T |
44686415 |
tagaaaattgttgtttacactcttgtgaaggctaaaaaaacaccataaaat |
44686365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 37165122 - 37165169
Alignment:
| Q |
152 |
gaaaattgatgtttacactattgtgaaggctaaaaaacaccataaaat |
199 |
Q |
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| T |
37165122 |
gaaaattgctgtttacactcttgtgaaggctaagaaacatcataaaat |
37165169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 19401855 - 19401808
Alignment:
| Q |
152 |
gaaaattgatgtttacactattgtgaaggctaaaaaacaccataaaat |
199 |
Q |
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||||||| ||||||||||| |||| |||||||| |||||||||||||| |
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| T |
19401855 |
gaaaattaatgtttacactcttgtaaaggctaagaaacaccataaaat |
19401808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 29035475 - 29035428
Alignment:
| Q |
152 |
gaaaattgatgtttacactattgtgaaggctaaaaaacaccataaaat |
199 |
Q |
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|||||| | |||||||||| |||||||||||||||||||| ||||||| |
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| T |
29035475 |
gaaaatcgttgtttacacttttgtgaaggctaaaaaacacaataaaat |
29035428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 31514 - 31474
Alignment:
| Q |
152 |
gaaaattgatgtttacactattgtgaaggctaaaaaacacc |
192 |
Q |
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| T |
31514 |
gaaaattgctgcttacactcttgtgaaggctaaaaaacacc |
31474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 10400074 - 10400118
Alignment:
| Q |
155 |
aattgatgtttacactattgtgaaggctaaaaaacaccataaaat |
199 |
Q |
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| T |
10400074 |
aattgttgtttatactcttgtgaaggctaagaaacaccataaaat |
10400118 |
T |
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