View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1332_high_19 (Length: 256)

Name: NF1332_high_19
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1332_high_19
NF1332_high_19
[»] chr7 (2 HSPs)
chr7 (1-223)||(1717876-1718098)
chr7 (107-160)||(35782067-35782120)
[»] chr4 (3 HSPs)
chr4 (1-223)||(53481027-53481240)
chr4 (107-162)||(5786703-5786758)
chr4 (107-163)||(55431898-55431954)
[»] chr1 (6 HSPs)
chr1 (4-203)||(48241823-48242022)
chr1 (20-105)||(46269494-46269579)
chr1 (117-163)||(27067780-27067826)
chr1 (110-163)||(36012186-36012239)
chr1 (108-161)||(45814335-45814388)
chr1 (106-162)||(16587212-16587268)
[»] chr2 (2 HSPs)
chr2 (14-186)||(40366305-40366477)
chr2 (14-60)||(34116101-34116147)
[»] chr3 (2 HSPs)
chr3 (1-94)||(47746727-47746820)
chr3 (116-163)||(41226117-41226164)
[»] scaffold0094 (1 HSPs)
scaffold0094 (107-162)||(23726-23781)
[»] chr8 (3 HSPs)
chr8 (108-163)||(36481034-36481089)
chr8 (14-63)||(38246471-38246520)
chr8 (110-186)||(38921480-38921556)
[»] chr5 (1 HSPs)
chr5 (88-163)||(25352923-25352998)
[»] chr6 (3 HSPs)
chr6 (14-60)||(19249147-19249193)
chr6 (89-186)||(29071701-29071798)
chr6 (89-186)||(29104274-29104371)
[»] scaffold0031 (1 HSPs)
scaffold0031 (110-163)||(51620-51673)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1717876 - 1718098
Alignment:
Q  1 tgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||    
T  1717876 tgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacagg 1717975  T
Q  101 tctagtgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaaccaaggataacttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  1717976 tctagtgttgatgatgtttggcataagcatattccctcaaaggtttctttgttggtgtggcgtttacttcgtaaccgaattccaacaaaggacaacttag 1718075  T
Q  201 agcatcaggacgttctaaattcg 223  Q
    |||| | || |||||||| ||||    
T  1718076 agcaacggggcgttctaacttcg 1718098  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 35782120 - 35782067
Alignment:
Q  107 gttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtgg 160  Q
    ||||||||||| |||||||| |||||||| ||||| |||||  |||||||||||    
T  35782120 gttgatgatgtgtggcataaacatattccgtcaaaggtttccgtgttggtgtgg 35782067  T

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Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53481240 - 53481027
Alignment:
Q  1 tgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | ||         ||    
T  53481240 tgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaagggagcctgcacctttttgacaagcaatggcgtta---------gg 53481150  T
Q  101 tctagtgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaaccaaggataacttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  53481149 tctagtgttgatgatgtttggcataagcatattccctcaaaggtttctttgttggtgtggcgtctacttcgtaaccgaattccaactaaggacaacttag 53481050  T
Q  201 agcatcaggacgttctaaattcg 223  Q
    |||||  || |||||||||||||    
T  53481049 agcataggggcgttctaaattcg 53481027  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 5786758 - 5786703
Alignment:
Q  107 gttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcg 162  Q
    ||||||||||| |||||||| |||||||| ||||| |||||| |||||||||||||    
T  5786758 gttgatgatgtgtggcataaacatattccatcaaaggtttctgtgttggtgtggcg 5786703  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 55431898 - 55431954
Alignment:
Q  107 gttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    ||||||||||| |||||||| ||||| || ||||| || ||||||||||||||||||    
T  55431898 gttgatgatgtgtggcataaacatatcccttcaaaggtgtctttgttggtgtggcgt 55431954  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 48241823 - 48242022
Alignment:
Q  4 tcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtct 103  Q
    |||||||||||||| ||||||||||||||||||||||||||| || |||| | ||| |||||| ||||||| ||||||||| ||| ||||||||| ||||    
T  48241823 tcatgacaaatggcagtggctgttagatcccattcatggttattcagtgaagagagtctacacttttttgacaagcaatggcgctttggtgaacatgtct 48241922  T
Q  104 agtgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaaccaaggataacttagagc 203  Q
      ||||||||||||||||||||||| |||||||||||| || | |||||||||||||||| |||||||||| || |||||||| ||||| ||||||||||    
T  48241923 tatgttgatgatgtttggcataagcttattccctcaaaggtatatttgttggtgtggcgtctacttcgtaatcgcattccaactaaggacaacttagagc 48242022  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 46269579 - 46269494
Alignment:
Q  20 tggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctag 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||    
T  46269579 tggctgttagatcccattcatggttactcggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacaggtctag 46269494  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 27067780 - 27067826
Alignment:
Q  117 tttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    ||||||||||||| ||||| |||||||| |||||| |||||||||||    
T  27067780 tttggcataagcagattccttcaaaagtctctttgatggtgtggcgt 27067826  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 36012239 - 36012186
Alignment:
Q  110 gatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    |||||||||||||||| ||||||||| | |||||| ||| |||| |||||||||    
T  36012239 gatgatgtttggcataggcatattcctttaaaagtgtctgtgttcgtgtggcgt 36012186  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 45814388 - 45814335
Alignment:
Q  108 ttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggc 161  Q
    ||||||| |||||||||||||| ||||| ||||| || |||||| |||||||||    
T  45814388 ttgatgacgtttggcataagcaaattccttcaaaggtctctttgatggtgtggc 45814335  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 16587212 - 16587268
Alignment:
Q  106 tgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcg 162  Q
    ||||||||| || ||||||||||||||||| ||||| || ||| |||| ||||||||    
T  16587212 tgttgatgacgtctggcataagcatattccatcaaaggtgtctctgtttgtgtggcg 16587268  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 40366477 - 40366305
Alignment:
Q  14 tggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctagtgttgatg 113  Q
    ||||||||| || |||||||||||||||||||| |||||| |||||| |   |||||||||  |||| ||| | ||||||| ||||||| | ||||||||    
T  40366477 tggcggtggttgctagatcccattcatggttacacggtgaagggagcatcttcctttttgactagcactggcgatatggtggacaggtccaatgttgatg 40366378  T
Q  114 atgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaac 186  Q
    | |||| ||| |||||||| || || || || ||| |||||||||||||| |  |||||||||| ||||||||    
T  40366377 acgttttgcacaagcatataccttcgaaggtgtctctgttggtgtggcgtctctttcgtaaccgcattccaac 40366305  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 34116101 - 34116147
Alignment:
Q  14 tggcggtggctgttagatcccattcatggttactcggtgaggggagc 60  Q
    ||||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  34116101 tggcgttggttgttagatcctattcagggttactcggtgaggggagc 34116147  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 47746820 - 47746727
Alignment:
Q  1 tgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtg 94  Q
    |||||| | ||||||||||||| || || ||||||||||||| |||||| ||| |||||| || |||||| ||| ||||| ||| ||| |||||    
T  47746820 tgttcaagtcaaatggcggtggttgctaaatcccattcatggctactcgttgaagggagcttatacctttctgacaagcactggcgctttggtg 47746727  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 41226117 - 41226164
Alignment:
Q  116 gtttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    |||||||||||||| ||||| |||||||| |||||| |||||||||||    
T  41226117 gtttggcataagcagattccttcaaaagtctctttgatggtgtggcgt 41226164  T

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Target: scaffold0094 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 23726 - 23781
Alignment:
Q  107 gttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcg 162  Q
    |||||||||||||||||||| |||||||| ||||| |||||| | || ||||||||    
T  23726 gttgatgatgtttggcataaacatattccttcaaaggtttctctatttgtgtggcg 23781  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 36481034 - 36481089
Alignment:
Q  108 ttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    ||||||| |||| ||||||||| ||||| |||||||| |||||| |||||||||||    
T  36481034 ttgatgaagtttagcataagcagattccttcaaaagtctctttgatggtgtggcgt 36481089  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 38246520 - 38246471
Alignment:
Q  14 tggcggtggctgttagatcccattcatggttactcggtgaggggagccta 63  Q
    |||||||||||||||||||| |||||||| || |||||| ||||| ||||    
T  38246520 tggcggtggctgttagatcctattcatggctattcggtgcggggatccta 38246471  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 38921556 - 38921480
Alignment:
Q  110 gatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaac 186  Q
    ||||||||||||   ||||||||||| ||||| || ||||| |||| ||||||| | |||||||||||  |||||||    
T  38921556 gatgatgtttggttcaagcatattccttcaaaggtatctttattggcgtggcgtcttcttcgtaaccgggttccaac 38921480  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 25352998 - 25352923
Alignment:
Q  88 tatggtgaacaggtctagtgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    ||||||| |||||||||  |||||||| |||||| ||||| ||||  |||| || |||||||| ||||||||||||    
T  25352998 tatggtggacaggtctatcgttgatgacgtttggtataagtatatatcctccaaggtttctttattggtgtggcgt 25352923  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 19249193 - 19249147
Alignment:
Q  14 tggcggtggctgttagatcccattcatggttactcggtgaggggagc 60  Q
    ||||| |||||||||||||| ||||| |||||| |||||||||||||    
T  19249193 tggcgttggctgttagatcctattcagggttacacggtgaggggagc 19249147  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 29071798 - 29071701
Alignment:
Q  89 atggtgaacaggtctagtgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaac 186  Q
    |||||| ||| ||||  |||||||||||||||| ||||| |||| ||||| || || || || |||||||||||| | |||| ||| || ||||||||    
T  29071798 atggtggacatgtcttttgttgatgatgtttggtataagtatatcccctcgaaggtatcgttattggtgtggcgtcttcttcataatcgcattccaac 29071701  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 29104371 - 29104274
Alignment:
Q  89 atggtgaacaggtctagtgttgatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgtttacttcgtaaccgaattccaac 186  Q
    |||||| ||| ||||  |||||||||||||||| ||||| |||| ||||| || || || || |||||||||||| | |||| ||| || ||||||||    
T  29104371 atggtggacatgtcttttgttgatgatgtttggtataagtatatcccctcgaaggtatcgttattggtgtggcgtcttcttcataatcgcattccaac 29104274  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 51673 - 51620
Alignment:
Q  110 gatgatgtttggcataagcatattccctcaaaagtttctttgttggtgtggcgt 163  Q
    |||||||| ||||||| ||| |||||||||||||| ||| ||||||| ||||||    
T  51673 gatgatgtctggcataggcagattccctcaaaagtgtctctgttggtttggcgt 51620  T

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