View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_high_2 (Length: 551)
Name: NF1332_high_2
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 71 - 525
Target Start/End: Original strand, 31710750 - 31711197
Alignment:
| Q |
71 |
gacatcatcaaaatcaatgttgtttttattagcatctagttgaattggaccatgcaataagagactagctagcactacgtaacactagcaagtagcaata |
170 |
Q |
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| T |
31710750 |
gacatcatcaaaatcaatgttgtttttattagcatatagttgaattggaccatgcaataagagactagctagcactacgtaacactagc-------aata |
31710842 |
T |
|
| Q |
171 |
aaagatacaaatacaaaagaccaaatcaatcaaagaagctacaatacaactcaataattcagaatctatctagcttgtgtcaccccttcccaacatagtc |
270 |
Q |
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| T |
31710843 |
aaagatacaaatacaaaagaccaaatcaatcaaaggagctacaatacaactcaataattcagaatctatctagcttgtgtcaccccttcccaacatagtc |
31710942 |
T |
|
| Q |
271 |
ataaaacttcattccatatttgggagattgaagttgattttcttccaggaaaaactatttgaaactctaaagctagattcagtttcaccactacattaca |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31710943 |
ataaaacttcattccatatttgggagattgaagttgattttcttccagaaaaaactatttgaaactctaaagctagattcagtttcaccactacattaca |
31711042 |
T |
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| Q |
371 |
caaatgaaaagccatggtcacaataaatgtgtttcctttatttgaatacatgatgacatcaccaaaatagacattttggtttgaataggtaaactatttg |
470 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31711043 |
caaatgaaaagctatggtcacaataaatgtgtttcctttatttgaatacacgatgacatcaccaaaatagacattttggtttcaataggtaaactatttg |
31711142 |
T |
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| Q |
471 |
tatgatattggaggatttcaaggaaggtcctgtttggaagagaggaatcagtgat |
525 |
Q |
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| T |
31711143 |
tatgatattggaggatttcaaggaaggtcctgtttggaagagaggaatcagtgat |
31711197 |
T |
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