View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1332_high_3 (Length: 529)

Name: NF1332_high_3
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1332_high_3
NF1332_high_3
[»] chr3 (1 HSPs)
chr3 (93-529)||(2411121-2411557)
[»] scaffold0393 (1 HSPs)
scaffold0393 (93-526)||(13502-13934)
[»] chr8 (2 HSPs)
chr8 (106-324)||(30598859-30599081)
chr8 (352-388)||(30599084-30599120)


Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 93 - 529
Target Start/End: Original strand, 2411121 - 2411557
Alignment:
Q  93 cttaactcaccgatcgagctaccgtggctcacattaatgcatcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411121 cttaactcaccgatcgagctaccgtggctcacattaatgcatcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaa 2411220  T
Q  193 caaagaaaaagaataaagacgaatgcgaagatggatgaagctatttcattttaataagtgattacataagttttttgggtgctatgatacaccatgtagt 292  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411221 caaagaaaaagaataaagacgaatgcaaagatggatgaagctatttcattttaataagtgattacataagttttttgggtgctatgatacaccatgtagt 2411320  T
Q  293 gtaaaacatagtaaagatgttggattacatttaagattactaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtcc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411321 gtaaaacatagtaaagatgttggattacatttaagattactaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtcc 2411420  T
Q  393 accaccatctgtttttgatttggtagacatccctttgttgggtagagatgagatagtatctacactttgatagcagtgttctgtttttaaccttgctatc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  2411421 accaccatctgtttttgatttggtagacatccctttgttgggtagagatgagatagtatctacactttgatagcagatttctgtttttaaccttgctatc 2411520  T
Q  493 aaagtcaaatctaacattaattgttaccagcaaagta 529  Q
    |||||||||||||||||||||||||||||||||||||    
T  2411521 aaagtcaaatctaacattaattgttaccagcaaagta 2411557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 93 - 526
Target Start/End: Original strand, 13502 - 13934
Alignment:
Q  93 cttaactcaccgatcgagctaccgtggctcacattaatgcatcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaa 192  Q
    |||||||||| ||||||||||||||||||  || |||||||||||||| |||||| ||| |||||||||||||||| |||||||||| ||||||||||||    
T  13502 cttaactcacagatcgagctaccgtggcttgcaataatgcatcatgtagtttagaggatctgaatttggcctttatgatattactgtcaagaaagatgaa 13601  T
Q  193 caaagaaaaagaataaagacgaatgcgaagatggatgaagctatttcattttaataagtgattacata-agttttttgggtgctatgatacaccatgtag 291  Q
    ||||  |||| |  ||| |  ||||| ||||||||||||| | ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  13602 caaaagaaaaaagaaaaaaaaaatgcaaagatggatgaagttgtttcattttaataagtgattacatttagttttttgggtg-tatgatacaccatgtag 13700  T
Q  292 tgtaaaacatagtaaagatgttggattacatttaagattactaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtc 391  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||   || |  ||   ||||| |||||| ||||||||||||||    
T  13701 tgtaaaacatcgtaaagatgttggattacatttaagattactaaaagctatata--tttaagattactga---aaaaaaaacacttctcccttcatagtc 13795  T
Q  392 caccaccatctg-tttttga-tttggtagacatccctttgttgggtagagatgagatagtatctacactttgatagcagtgttctg-tttttaaccttgc 488  Q
     ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||    
T  13796 taccaccatctgttttttgattttggtagacatccctttgttgggtagagatgagacaatatctacacttcgatagcagtgttctgttttttaaccttgc 13895  T
Q  489 tatcaaagtc-aaatctaacattaattgttaccagcaaa 526  Q
    |||||||||| ||||||||||||||||| |||| |||||    
T  13896 tatcaaagtcaaaatctaacattaattgctaccggcaaa 13934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 106 - 324
Target Start/End: Original strand, 30598859 - 30599081
Alignment:
Q  106 tcgagctaccgtggctcacattaatgcatcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaacaaagaaaaagaa 205  Q
    |||||||||||||| ||||||||||||| |||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||    
T  30598859 tcgagctaccgtggttcacattaatgcagcatgtattctagaggatctgaatttggcctttatgatattactgtgaagaaagatgaacaaataaaaggaa 30598958  T
Q  206 taaagacgaatgcgaagatggatgaagctatttcattttaataagtgattacataagttttttgggtgctatgata---caccatgtagtgt-aaaacat 301  Q
     |||||  ||| | | ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||   ||||||| |  || |||||||    
T  30598959 aaaagaaaaatacaatgatggataaagctgtttcattttaataagtgattacataagttttttgggcgcaatgatacaccaccatgcaaagtaaaaacat 30599058  T
Q  302 agtaaagatgttggattacattt 324  Q
    |||||||||||||||||||||||    
T  30599059 agtaaagatgttggattacattt 30599081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 30599084 - 30599120
Alignment:
Q  352 gtatcaaagactgaaaaagaacactgctcccttcata 388  Q
    ||||||||||||||||| |||||||||||||||||||    
T  30599084 gtatcaaagactgaaaatgaacactgctcccttcata 30599120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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