View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1332_high_4 (Length: 397)
Name: NF1332_high_4
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 10550787 - 10551146
Alignment:
| Q |
9 |
agcagagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10550787 |
agcacagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacag |
10550886 |
T |
|
| Q |
109 |
atcaacccatatcactgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10550887 |
atcaacccatatcactgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcat |
10550986 |
T |
|
| Q |
209 |
tcactgtgatttaaagcctgaaaatattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10550987 |
tcactgtgatttaaagcctgaaaatattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtc |
10551086 |
T |
|
| Q |
309 |
gctctgacgcagagtagcacaattggaataaaggggacaattggctatgcacccccaggt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10551087 |
gctctgacgcagagtagcacaattggaataaaggggacaattggctatgcacctccaggt |
10551146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 19606044 - 19605988
Alignment:
| Q |
36 |
aaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccc |
92 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
19606044 |
aaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatccc |
19605988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 10740881 - 10740824
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
90 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
10740881 |
tttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10740824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 10565054 - 10565112
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
91 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||| |||||| | ||||||||||| |
|
|
| T |
10565054 |
tttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgcatcc |
10565112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 10604779 - 10604837
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
91 |
Q |
| |
|
||||||||||| || ||||| ||||||| |||||||| ||||||| | ||||||||||| |
|
|
| T |
10604779 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcc |
10604837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 19605754 - 19605708
Alignment:
| Q |
323 |
tagcacaattggaataaaggggacaattggctatgcacccccaggtt |
369 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| || ||||||| |
|
|
| T |
19605754 |
tagcacaattggaataaaagggaccattggctatgctcctccaggtt |
19605708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 10717122 - 10717065
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
90 |
Q |
| |
|
||||||||||| || ||||| ||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
10717122 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10717065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 10611737 - 10611797
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccca |
93 |
Q |
| |
|
|||||||| || || ||||| ||||||| |||||||| ||||||| | ||||||||||||| |
|
|
| T |
10611737 |
tttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatccca |
10611797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 368
Target Start/End: Complemental strand, 31467344 - 31467009
Alignment:
| Q |
33 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatatcactgactcttg |
132 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| |||| |||||||| |||||||||||| ||| | |||| ||| || | | | || ||| ||| | |
|
|
| T |
31467344 |
tttaaagctcttgttttcgagtacatgaaaaacggaagcttagaaagttggttgcatccagcaaaagaaattgcaggtccagaaaaaacattgaatctag |
31467245 |
T |
|
| Q |
133 |
agcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgatttaaagcctgaaaa |
232 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || |||||| |||||||||| | ||||| |||||||||||||||| ||||||||||||||| || |
|
|
| T |
31467244 |
cacaaaggttaaatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaa |
31467145 |
T |
|
| Q |
233 |
tattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtcgctctgacgcagagtagcacaatt |
332 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||| | |||| ||| | ||| || || |
|
|
| T |
31467144 |
cgttcttcttgatgattctatggtagctcatgtgagtgattttggcatagcaaagttgcttccaagtattggagtctcactgatgcaaaatagtactgtt |
31467045 |
T |
|
| Q |
333 |
ggaataaaggggacaattggctatgcacccccaggt |
368 |
Q |
| |
|
|||||| | ||||||||||| ||||| || |||||| |
|
|
| T |
31467044 |
ggaatacaagggacaattggttatgctcctccaggt |
31467009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University