View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_1 (Length: 818)
Name: NF1332_low_1
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Original strand, 35095526 - 35095881
Alignment:
| Q |
30 |
tttaggcctggccatgtggtatcgaattggttgttcattaagctaatggttctgatatacggtaaatccttgatggaatcgatgtcaatgttgcctttaa |
129 |
Q |
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| T |
35095526 |
tttaggcctggccatgtggtatcgaattggttgttcattaagctaatggttctgatatacggtaaatccttgatggaatcgatgtcaatgttgcctttaa |
35095625 |
T |
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| Q |
130 |
ggttcatgttttcgagtttaaatccccaaacatgtcctttgtaacaaagaacgcccgcccaatttgcattatcagcattacatggaggcatggatgtatt |
229 |
Q |
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| T |
35095626 |
ggttcatgttttcgagtttaaatccccaaacatgtcctttgtaacaaagaacgcccgcccaatttgcattatcagcattacatggaggcatggatgtatt |
35095725 |
T |
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| Q |
230 |
ccatgaagataatgcaacgtcggtgttttgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaata |
329 |
Q |
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| T |
35095726 |
ccatgaagataatgcaacgtcggtgttttgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaata |
35095825 |
T |
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| Q |
330 |
gaaaagaagaaagtgatgaagaatgatggtgccataataataaaatatagtgaagg |
385 |
Q |
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| T |
35095826 |
gaaaagaagaaagtgatgaagaatgatggtgccataataataaaatatagtgaagg |
35095881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 436 - 598
Target Start/End: Original strand, 35095932 - 35096094
Alignment:
| Q |
436 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatttttg |
535 |
Q |
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| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatttttg |
35096031 |
T |
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| Q |
536 |
agatggaggagaaagagaaacaaacgcaaggagcagaaagaaacaaagctaataatagagtaa |
598 |
Q |
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| T |
35096032 |
agatggaggagaaagagaaacaaacgcaaggagcagaaagaaacaaagctaataatagagtaa |
35096094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 646 - 789
Target Start/End: Original strand, 35096147 - 35096287
Alignment:
| Q |
646 |
aattaattcagatagaaatagagatccatagagtgagtgagattaattaataatcaattgaccaagtccttaattttatttaatttttgtgtttatcaaa |
745 |
Q |
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| T |
35096147 |
aattaattcagatagaaatagagatccatagagtgagtgagattaattaat---caattgaccaagtccttaattttatttaatttttgtgtttatcaaa |
35096243 |
T |
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| Q |
746 |
gaaaattccttcgcataccagaaatgcacggccagcctttgaat |
789 |
Q |
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| T |
35096244 |
gaaaattccttcgcataccagaaatgcacggccagcctttgaat |
35096287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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