View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_11 (Length: 395)
Name: NF1332_low_11
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 65 - 384
Target Start/End: Complemental strand, 24136879 - 24136560
Alignment:
| Q |
65 |
aaccatgatcaacggctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgcgcatcttgggaagcaatt |
164 |
Q |
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| T |
24136879 |
aaccatgatcaacggctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgtgcatcttgggaagcaatt |
24136780 |
T |
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| Q |
165 |
attgcgggttagggtaagactggtcactatgaataagctatggacatgctggtgaagatgaaaagggacgacaaaaatttaaatagatctaccttatgtt |
264 |
Q |
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| T |
24136779 |
attgctggttaggctaagactggtcactatgaataagctatggacatgctggtgaagatgaaaagggacggcaaaaatttaaatagatctaccttatgtt |
24136680 |
T |
|
| Q |
265 |
tgctttaagcacatgtgttggtatggctgctttggtgttagggaaacgacttcatggacaggtggtgaagactggggtccgctatgttgtcctttccgcc |
364 |
Q |
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| T |
24136679 |
tgccttaagcacatgtgctggtatggctgctttggtgttagggaaacgacttcatggacaggtggtgaagacaggggtacgctatgttgtcctttccgcc |
24136580 |
T |
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| Q |
365 |
cttcacccattccttttcat |
384 |
Q |
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| T |
24136579 |
cttcacccattccttttcat |
24136560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 66 - 384
Target Start/End: Complemental strand, 24134565 - 24134246
Alignment:
| Q |
66 |
accatgatcaacggctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgcgcatcttgggaagcaatta |
165 |
Q |
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| T |
24134565 |
accatgatcaacggctatgatcagaaaggaaatattgctcaagttggcaaattgtttgacatgatggctaaccgcgattgtgtatcttgggtggcaatta |
24134466 |
T |
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| Q |
166 |
ttgcgggttagggtaagactggtcactatgaataagctatggacatgctggtgaagatgaaaagggacgacaaaaatttaaatagatctaccttatgtt- |
264 |
Q |
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| T |
24134465 |
ttggtggttaggctcagactggtcattatgaagaagctatggacatgctggtgaagatgaaaagggatggcgaaagtttatgtagatatacattatgttg |
24134366 |
T |
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| Q |
265 |
tgctttaagcacatgtgttggtatggctgctttggtgttagggaaacgacttcatggacaggtggtgaagactggggtccgctatgttgtcctttccgcc |
364 |
Q |
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| ||| |||||||||| |||||||||||||||||||||| |||||| |||||||||| ||| ||||||||| |||| | | ||||||||||||||| || |
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| T |
24134365 |
tcatttgagcacatgtgctggtatggctgctttggtgttaaggaaacaacttcatggataggcggtgaagacaggggcctggtatgttgtcctttccacc |
24134266 |
T |
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| Q |
365 |
cttcacccattccttttcat |
384 |
Q |
| |
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| T |
24134265 |
cttcacccattccttttcat |
24134246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 24134216 - 24134080
Alignment:
| Q |
181 |
agactggtcactatgaataagctatggacatgctggtgaagatgaaaagggacgacaaaaatttaaatagatctaccttatgt-ttgctttaagcacatg |
279 |
Q |
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|||||| |||||||||| ||| |||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||||| |||||||| |
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| T |
24134216 |
agactgatcactatgaagaagttatggacatgctggtgaagatgaaaagggacggcgaaagtgtaaatagatctaccttatgtggtgctttgagcacatg |
24134117 |
T |
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| Q |
280 |
tgttggtatggctgctttggtgttagggaaacgactt |
316 |
Q |
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|||| ||| ||||||||| || ||||||||| |||| |
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| T |
24134116 |
tgttcgtaaggctgctttcatgctagggaaacaactt |
24134080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 66 - 336
Target Start/End: Original strand, 45149024 - 45149295
Alignment:
| Q |
66 |
accatgatcaacggctatggtcagaacgaagatattgctcaagctaggaaattgtttgacatgatggctcaacgcgattgcgcatcttgggaagcaatta |
165 |
Q |
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||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| | |||||||| ||||||| |
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| T |
45149024 |
accattatcagcggctatggtcagaacggagatattgctcaagctagggaattgtttgacatgatgactcagcgcgattgtgtatcttgggcggcaatta |
45149123 |
T |
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| Q |
166 |
ttgcgggttagggtaagactggtcactatgaataagctatggacatgctggtgaagatgaaaagggacgacaaaaatttaaatagatctaccttatgtt- |
264 |
Q |
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|||| ||||| | | ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
45149124 |
ttgctggttatgctcagactggtcactatgaaaaagttatgcacatgctggtgaagatgaaaagggacggcaaaagtttaaatagatctaccttttgttg |
45149223 |
T |
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| Q |
265 |
tgctttaagcacatgtgttggtatggctgctttggtgttagggaaacgacttcatggacaggtggtgaagac |
336 |
Q |
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| T |
45149224 |
tgctttgagcacatgtgctggtatggctgctttggtgttagggaaacaagttcatggacaggcggtgaagac |
45149295 |
T |
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