View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_15 (Length: 343)
Name: NF1332_low_15
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_15 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 16405290 - 16405468
Alignment:
| Q |
66 |
aaataagggtgagaaacaattatttgattctcaagtaggatcgaaccaagctctagataccatgttgaaattgtgatattttagatgaaagggagagatg |
165 |
Q |
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| T |
16405290 |
aaataagggtgagaaaaaattatttgattctcaagtaggatcgaaccaagctctagataccatgttgaaattgtgatattttagataaaagggagagatg |
16405389 |
T |
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| Q |
166 |
aaataataagagccatgaacattgttaatactgagtgcattgtagcttaatacagaagactaaatactaatcataaacc |
244 |
Q |
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| T |
16405390 |
aaataataagagccatgaacattgttgatactgagtgcattgtagcttaatacagaagactaaatactaatcataaacc |
16405468 |
T |
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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 29451 - 29408
Alignment:
| Q |
108 |
gaaccaagctctagataccatgttgaaattgtgatattttagat |
151 |
Q |
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| T |
29451 |
gaaccaagctctagataccatgttgaagttgtgagattttagat |
29408 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 41222862 - 41222830
Alignment:
| Q |
96 |
tcaagtaggatcgaaccaagctctagataccat |
128 |
Q |
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| T |
41222862 |
tcaagtaggattgaaccaagctctagataccat |
41222830 |
T |
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