View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_17 (Length: 335)
Name: NF1332_low_17
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 34419033 - 34418728
Alignment:
| Q |
1 |
ctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtccttcccttcatctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419033 |
ctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtccttcccttcatctct |
34418934 |
T |
|
| Q |
101 |
gagtccccaagatggtaccttgttcgaggaagaataaacgaagcgactacactcatgtccaccattgcttctttcaatgggaaacaccttccagacggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34418933 |
gagtccccaagatggtaccttgttcgaggaagaataaacgaagcgactacactcatgtccaccattgcttctttcaatgggaaacacctcccagacggag |
34418834 |
T |
|
| Q |
201 |
ttgtcctcgcacttgatgaagaggtatcaaattcnnnnnnntcaacaagtgatcttgaatacaacctaattagctacgtggaaaacaaggatgcacaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418833 |
ttgtcctcgcacttgatgaagaggtatcaaattcaaaaaaatcaacaagtgatcttgaatacaacctaattagctacgtggaaaacaaggatgcacaagt |
34418734 |
T |
|
| Q |
301 |
tggatc |
306 |
Q |
| |
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|||||| |
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| T |
34418733 |
tggatc |
34418728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 34431282 - 34430977
Alignment:
| Q |
1 |
ctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtccttcccttcatctct |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||| || | |||||||||| ||| |||| |||||||| || |||||||||| ||||| |
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| T |
34431282 |
ctctggtattgcctacatcttccaaacatggcgtgcactctatatcgccgcctccatcccctccctcctctacataattctcctccttccctttgtctct |
34431183 |
T |
|
| Q |
101 |
gagtccccaagatggtaccttgttcgaggaagaataaacgaagcgactacactcatgtccaccattgcttctttcaatgggaaacaccttccagacggag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
34431182 |
gagtccccaagatggtacctcgttcgaggaagaataaacgaagcaactgcgctcatgtccactattgcttatttcaatgggaaacaccttccagacggag |
34431083 |
T |
|
| Q |
201 |
ttgtcctcgcacttgatgaagaggtatcaaattcnnnnnnntcaacaagtgatcttgaatacaacctaattagctacgtggaaaacaaggatgcacaagt |
300 |
Q |
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|||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
34431082 |
ttgtcctctcactcgatgaagaagtatcaaattcaaacaaatcaacaagtgatcttgaatacaacctaattaactacgtggaaaataaggatgcacaagt |
34430983 |
T |
|
| Q |
301 |
tggatc |
306 |
Q |
| |
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|||||| |
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| T |
34430982 |
tggatc |
34430977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 31612700 - 31612763
Alignment:
| Q |
81 |
ttgtccttcccttcatctctgagtccccaagatggtaccttgttcgaggaagaataaacgaagc |
144 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |
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|
| T |
31612700 |
ttgtcctccccttcatctctgagtcccctcgatggtaccttgttcgaggacgaatcaaagaagc |
31612763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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