View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1332_low_19 (Length: 329)

Name: NF1332_low_19
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1332_low_19
NF1332_low_19
[»] chr1 (3 HSPs)
chr1 (49-139)||(52800394-52800484)
chr1 (139-209)||(52800548-52800618)
chr1 (260-321)||(52800651-52800712)
[»] scaffold0042 (2 HSPs)
scaffold0042 (139-209)||(32070-32140)
scaffold0042 (51-135)||(31900-31984)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 52800394 - 52800484
Alignment:
Q  49 gtttcttcacttgctcgtgtaacttatcgaactcatgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttttcctc 139  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52800394 gtttcttcacttgctcatgtaacttatcgaactcgtgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttttcctc 52800484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 52800548 - 52800618
Alignment:
Q  139 cattgataagagacttgagtttgaagaactcggagcggatgattctgcaaatactggagtcctgatgctcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  52800548 cattgataagagacttgagtttgaagaactcggagcggatgattctgcgaatactggagtcctgattctcc 52800618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 52800651 - 52800712
Alignment:
Q  260 ggcggcggcgacgttgaggcgttctctcttaacgcgacgaaacagttgttgttcttcatctc 321  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  52800651 ggcggcggcggcgttgaggcgttctctcttaacgcgacgaaacacttgttgttcttcttctc 52800712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 32070 - 32140
Alignment:
Q  139 cattgataagagacttgagtttgaagaactcggagcggatgattctgcaaatactggagtcctgatgctcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  32070 cattgataagagacttgagtttgaagaactcggagcggatgattctgcgaatgttggagtcctgatgctcc 32140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 31900 - 31984
Alignment:
Q  51 ttcttcacttgctcgtgtaacttatcgaactcatgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatcttttt 135  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||| || ||| ||  |||||| |||||||||||||    
T  31900 ttcttcacttgctcgtctaacttgtcgaagtcatgaaggattgaatcgaacttgtccgaagcagtgttcattaaatcatcttttt 31984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University