View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_20 (Length: 318)
Name: NF1332_low_20
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 9896209 - 9895925
Alignment:
| Q |
29 |
agaaaatatgtagatagtaatgggatgagtaattgctagatatttcataatctaggtagaatgtgattaatggatattgatgaataca-ttgtgcacgtt |
127 |
Q |
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| T |
9896209 |
agaaaatatgtagatagtaatgggatgagtaagtactagatatttcataatctaggtagaatgtgattaatggatattgatgaatacaattatccacgtt |
9896110 |
T |
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| Q |
128 |
acaagtagtagtctgtattaagaagtcagtgatgttactaggttgtggaatttacacattaggcagaaaaattatttgtttaaaagttactagttatgct |
227 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9896109 |
acaagtagta---tgtattaagaagtcattgatgttactaggttgtgaaatttacacattaggcagaacaattatttgtttaaaagttactagttatgct |
9896013 |
T |
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| Q |
228 |
ttgtacgaacaggcactgtcacattaatgtggcacataattagaaggtaagaaattctattgagtatggaggaaagtattatgtaccc |
315 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
9896012 |
ttgtacgaacaggcactgtcacattaaagtggcacataattagaaggtaagaaattctattgagtgtggaggaaagtattaggtaccc |
9895925 |
T |
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