View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1332_low_25 (Length: 299)
Name: NF1332_low_25
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26274660 - 26274891
Alignment:
| Q |
1 |
tcctagagagacggggaagcaatccaagaagaaggaaggatggtgagactttccgtgaagttattcccnnnnnnnnttaattatttgtaattaggaatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26274660 |
tcctagagagacggggaagcaatccaagaagaaggaaggatggtgagactttccgtgaagttattcccaaaaaaaattaattatttgtaattaggaatac |
26274759 |
T |
|
| Q |
101 |
tctttgaaattgaaatgcattattttatttaatcatttctgtccaaattaaacacctttatatatagcttaatgtcattcgtattcataaagtcttacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26274760 |
tctttgaaattgaaatgcattattttatttaatcatttctgtccaaattaaacacctttatatatagcttaatgtcattcgtattcataaagtcttacag |
26274859 |
T |
|
| Q |
201 |
ttatgaattgaagcaataaacattaacaagtt |
232 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
26274860 |
ttacgaattgaagcaataaacattaacaagtt |
26274891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 26274906 - 26274938
Alignment:
| Q |
259 |
tgttgattcctctcttcctttacatcctatgct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26274906 |
tgttgattcctctcttcctttacatcctatgct |
26274938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University