View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_27 (Length: 280)
Name: NF1332_low_27
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 1591064 - 1591205
Alignment:
| Q |
124 |
gcatccacctattactcaatctcattcccacacccacccacccaccatatacgtacatatattatatccaattatcgatatatagatcatttcaattatt |
223 |
Q |
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| T |
1591064 |
gcatccacctattactcagtctcattcccacacc----cacccaccatatacgtacatatattatatccaattatcgatatatagatcatttcaattatt |
1591159 |
T |
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| Q |
224 |
tttagctgcctcgattattattcctttgcttactcattctcttcat |
269 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1591160 |
tttagctgcctcaattattattcctttgcttactcattctcttcat |
1591205 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 1590972 - 1591007
Alignment:
| Q |
30 |
aaacacattcaaaacaaataagataaagtaatacac |
65 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1590972 |
aaacacattcaaaacaaataagataaagtaatacac |
1591007 |
T |
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