View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_28 (Length: 264)
Name: NF1332_low_28
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 31710512 - 31710259
Alignment:
| Q |
1 |
accaaacatatgttaagagtattattggtttgagaatttgtttttatctagttctcactaatcatttcggcctggtatatatcatgtctgatatctcagt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||| |
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| T |
31710512 |
accaaacatatgttaagaatattattggtttgagaatttgtttttatctagttctcaccagtcatttcggcctcgtatatatcatgtctggtatctcagt |
31710413 |
T |
|
| Q |
101 |
agatttgtcaaaattacgaagagccaccttaattttgcaaaataccgtggccattttctcgaatcatatatatgattttaacataattcaaatgcaatta |
200 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31710412 |
agatttgtcaaaatcacgaaaagccaccttaattttgtaaattaccgtggccattttctcgaatcatatatatgattttagcataattcaaatgcaatta |
31710313 |
T |
|
| Q |
201 |
tgaattactcgtacattatcaaaactagcctagaataattttgcttgtcctttg |
254 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31710312 |
tgaattactagtacattatcaaaactagcctagaataattttgcttgtcctttg |
31710259 |
T |
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