View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1332_low_30 (Length: 259)

Name: NF1332_low_30
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1332_low_30
NF1332_low_30
[»] chr4 (3 HSPs)
chr4 (2-78)||(34140342-34140418)
chr4 (84-138)||(40333025-40333079)
chr4 (80-124)||(48583945-48583989)
[»] chr7 (1 HSPs)
chr7 (78-138)||(13066826-13066886)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 34140418 - 34140342
Alignment:
Q  2 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140418 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 34140342  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 40333025 - 40333079
Alignment:
Q  84 ctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40333025 ctgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttg 40333079  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 48583989 - 48583945
Alignment:
Q  80 agcgctgctatacagcaagacaaagtcagcacacgagagccacac 124  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  48583989 agcgctgctatacagcacgacaaaatcaacacacgaaagccacac 48583945  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 13066886 - 13066826
Alignment:
Q  78 agagcgctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg 138  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13066886 agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttg 13066826  T

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