View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_32 (Length: 251)
Name: NF1332_low_32
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 30968136 - 30968260
Alignment:
| Q |
75 |
gtatcatttctttctatggcttcaatttcctgatccatagcctctttccaacaattgaactttgcagcttcctcataagtagcaggatcttctctattac |
174 |
Q |
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| T |
30968136 |
gtatcatttctttctatggcttcaatttcctgatccatagcctctttccaacaattgaactttgcagcttcctcataagtagcaggatcttctctattac |
30968235 |
T |
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| Q |
175 |
tgaaaaagccagagtctgaaaactg |
199 |
Q |
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| T |
30968236 |
tgaaaaagccagagtctgaaaactg |
30968260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 30968091 - 30968138
Alignment:
| Q |
10 |
ttgtcttataaatccattttacactaatcttcctgcttccagttggta |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30968091 |
ttgtcttataaatccattttacactaatcttcctgcttccagttggta |
30968138 |
T |
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