View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_34 (Length: 248)
Name: NF1332_low_34
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 25729696 - 25729478
Alignment:
| Q |
26 |
agtggtctcaagagaaaatatcaaaataggcgacaactcaagagtgaaattgaatctttaaagagcctgaagttaaggtaacttggggtacacatttggt |
125 |
Q |
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| T |
25729696 |
agtggtctcaagagaaaatatcaaaataggcgacaactcaagagtgaaattgaatctttaaagagcctgaagttaaggtaacttggggtacacatttggt |
25729597 |
T |
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| Q |
126 |
gctagtggtattcaatattactttttggagatttttgagcaaaacaaaaatgaaatctatcttctaaagaaaaagaatgatcaaaatgatttttgttaga |
225 |
Q |
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| T |
25729596 |
gctagtggtattcaatat---tttttggagatttttgaggaaaacaaaaatgaaatctatcttctaaagaaaaacaatgatcaaaatgatttttgtt-ga |
25729501 |
T |
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| Q |
226 |
aactactcagaataactttttat |
248 |
Q |
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| T |
25729500 |
aactactcagaataactttttat |
25729478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 25729727 - 25729691
Alignment:
| Q |
97 |
gttaaggtaacttggggtacacatttggtgctagtggt |
134 |
Q |
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| T |
25729727 |
gttaaggtaacttggg-tacacatttggtgctagtggt |
25729691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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