View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_36 (Length: 218)
Name: NF1332_low_36
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_36 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 34127376 - 34127164
Alignment:
| Q |
6 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
105 |
Q |
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| T |
34127376 |
cacagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
34127277 |
T |
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| Q |
106 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc |
205 |
Q |
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| T |
34127276 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc |
34127177 |
T |
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| Q |
206 |
tgctagattgttc |
218 |
Q |
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||||||||||||| |
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| T |
34127176 |
tgctagattgttc |
34127164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 34133649 - 34133437
Alignment:
| Q |
6 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
105 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||| ||||| | ||| ||||| |||||| | |
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| T |
34133649 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
34133550 |
T |
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| Q |
106 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc |
205 |
Q |
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| T |
34133549 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagc |
34133450 |
T |
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| Q |
206 |
tgctagattgttc |
218 |
Q |
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| T |
34133449 |
ttctagattgttc |
34133437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 34137560 - 34137348
Alignment:
| Q |
6 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
105 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| ||||| |||||| | |
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| T |
34137560 |
cacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaa |
34137461 |
T |
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| Q |
106 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc |
205 |
Q |
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| T |
34137460 |
acttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagc |
34137361 |
T |
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| Q |
206 |
tgctagattgttc |
218 |
Q |
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||||| ||||||| |
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| T |
34137360 |
tgctaaattgttc |
34137348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 34141223 - 34141011
Alignment:
| Q |
6 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
105 |
Q |
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|||||||||||||||||| |||| |||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||| | ||| |||||||||||| | |
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| T |
34141223 |
cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa |
34141124 |
T |
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| Q |
106 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc |
205 |
Q |
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|||| || ||| ||||||||||||||||||| | ||||| |||||| |||| |||||||||| |||||||||||| | ||||| || ||||||||||| |
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| T |
34141123 |
gcttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc |
34141024 |
T |
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| Q |
206 |
tgctagattgttc |
218 |
Q |
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| T |
34141023 |
tgctagattgttc |
34141011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 34143705 - 34143638
Alignment:
| Q |
7 |
acagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccac |
74 |
Q |
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||||||||||||||||||||| | |||| ||||| ||||||| ||| ||||||| |||||| ||||| |
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| T |
34143705 |
acagaccaaaactctccatcacccaagctgaaggcattcccgtaatcaacctctccccaataatccac |
34143638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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