View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1332_low_7 (Length: 418)

Name: NF1332_low_7
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1332_low_7
NF1332_low_7
[»] chr3 (19 HSPs)
chr3 (1-361)||(395658-396018)
chr3 (2-254)||(26904982-26905240)
chr3 (2-254)||(36615800-36616058)
chr3 (265-357)||(26285849-26285940)
chr3 (265-357)||(36475454-36475545)
chr3 (265-357)||(23778242-23778338)
chr3 (283-356)||(30136571-30136644)
chr3 (283-356)||(30142700-30142773)
chr3 (283-356)||(30146122-30146195)
chr3 (265-357)||(24309863-24309954)
chr3 (267-357)||(36478213-36478302)
chr3 (265-341)||(52308879-52308954)
chr3 (267-321)||(25070748-25070802)
chr3 (267-321)||(36617814-36617868)
chr3 (321-357)||(25032184-25032220)
chr3 (267-321)||(26903172-26903226)
chr3 (272-357)||(6714403-6714487)
chr3 (265-321)||(38572998-38573054)
chr3 (265-340)||(7856503-7856577)
[»] chr8 (19 HSPs)
chr8 (2-254)||(45484218-45484476)
chr8 (269-357)||(44873272-44873359)
chr8 (263-354)||(29866152-29866244)
chr8 (265-361)||(2148367-2148463)
chr8 (264-357)||(43421498-43421591)
chr8 (265-357)||(7681391-7681482)
chr8 (265-357)||(10381408-10381499)
chr8 (265-329)||(33235567-33235631)
chr8 (267-321)||(11463189-11463243)
chr8 (270-356)||(29841200-29841286)
chr8 (282-357)||(24556949-24557023)
chr8 (272-366)||(7388163-7388257)
chr8 (267-321)||(45486232-45486286)
chr8 (321-357)||(32161474-32161510)
chr8 (265-341)||(11993699-11993774)
chr8 (269-341)||(34696984-34697055)
chr8 (264-299)||(31235876-31235911)
chr8 (303-357)||(36051250-36051304)
chr8 (321-357)||(6978414-6978450)
[»] chr6 (14 HSPs)
chr6 (2-254)||(18818744-18819002)
chr6 (2-254)||(24903512-24903770)
chr6 (271-361)||(30702678-30702768)
chr6 (265-357)||(16461657-16461748)
chr6 (265-343)||(14607790-14607867)
chr6 (276-366)||(8150815-8150905)
chr6 (271-361)||(30705276-30705360)
chr6 (265-347)||(6689202-6689283)
chr6 (267-316)||(24901708-24901757)
chr6 (321-357)||(2919968-2920004)
chr6 (267-321)||(18816934-18816988)
chr6 (275-341)||(33704117-33704182)
chr6 (272-357)||(1975287-1975372)
chr6 (281-341)||(21883260-21883319)
[»] chr1 (11 HSPs)
chr1 (2-254)||(1015028-1015286)
chr1 (265-353)||(44563555-44563643)
chr1 (265-357)||(8064967-8065058)
chr1 (265-357)||(9539641-9539732)
chr1 (266-357)||(10781246-10781336)
chr1 (267-357)||(1405936-1406026)
chr1 (265-355)||(27464286-27464375)
chr1 (319-361)||(29703073-29703115)
chr1 (304-357)||(23347843-23347896)
chr1 (303-356)||(47631234-47631287)
chr1 (267-313)||(1017042-1017088)
[»] chr7 (22 HSPs)
chr7 (14-255)||(39785776-39786023)
chr7 (265-359)||(39785482-39785576)
chr7 (270-356)||(25232934-25233020)
chr7 (262-357)||(26824462-26824557)
chr7 (265-357)||(2945423-2945516)
chr7 (265-329)||(10512080-10512148)
chr7 (266-357)||(34346836-34346926)
chr7 (267-321)||(39781035-39781089)
chr7 (266-357)||(27080405-27080493)
chr7 (266-357)||(27197808-27197896)
chr7 (265-341)||(38300406-38300481)
chr7 (290-357)||(16841044-16841111)
chr7 (265-357)||(30074656-30074749)
chr7 (265-357)||(32221863-32221956)
chr7 (319-361)||(33255021-33255063)
chr7 (270-332)||(40716946-40717008)
chr7 (267-321)||(43265971-43266025)
chr7 (272-357)||(26787263-26787348)
chr7 (268-357)||(46090226-46090314)
chr7 (265-341)||(24658426-24658501)
chr7 (321-357)||(33941710-33941746)
chr7 (264-314)||(6051137-6051187)
[»] chr4 (11 HSPs)
chr4 (265-357)||(2158617-2158708)
chr4 (265-357)||(2813976-2814067)
chr4 (266-357)||(4377223-4377313)
chr4 (271-353)||(1111989-1112071)
chr4 (266-356)||(36247816-36247905)
chr4 (266-357)||(33518016-33518107)
chr4 (309-361)||(30804384-30804436)
chr4 (321-357)||(50723229-50723265)
chr4 (19-58)||(8904326-8904365)
chr4 (291-361)||(35390460-35390530)
chr4 (303-357)||(46671925-46671979)
[»] chr5 (15 HSPs)
chr5 (271-357)||(25819064-25819149)
chr5 (270-356)||(39509146-39509232)
chr5 (265-357)||(5568999-5569091)
chr5 (265-357)||(33824761-33824853)
chr5 (274-357)||(26459679-26459761)
chr5 (276-354)||(43144551-43144630)
chr5 (265-357)||(980176-980268)
chr5 (265-341)||(7607289-7607364)
chr5 (265-357)||(36744924-36745015)
chr5 (265-357)||(34751105-34751196)
chr5 (267-321)||(17076651-17076705)
chr5 (321-357)||(36633917-36633953)
chr5 (270-323)||(14701129-14701182)
chr5 (2-58)||(26459853-26459909)
chr5 (269-321)||(29669996-29670048)
[»] scaffold0002 (1 HSPs)
scaffold0002 (265-357)||(461355-461446)
[»] chr2 (10 HSPs)
chr2 (267-357)||(32032961-32033050)
chr2 (273-357)||(38417776-38417860)
chr2 (265-356)||(7700327-7700417)
chr2 (265-341)||(34190029-34190104)
chr2 (270-357)||(27447736-27447823)
chr2 (267-321)||(4075464-4075518)
chr2 (319-361)||(37623585-37623627)
chr2 (321-357)||(11562149-11562185)
chr2 (272-347)||(18703693-18703763)
chr2 (319-361)||(8974464-8974506)
[»] scaffold0311 (1 HSPs)
scaffold0311 (265-361)||(871-962)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 395658 - 396018
Alignment:
Q  1 ctgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgttaaaaattgtgtaattatggtggggatcactttgtgggagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395658 ctgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgttaaaaattgtgtaattatggtggggatcactttgtgggagata 395757  T
Q  101 gttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgctctcatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395758 gttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgctctcatgaa 395857  T
Q  201 tccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgtcgactatcataatgatgttattttagctcattttcaacaaatggat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  395858 tccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgttaactatcataatgatgttattttagctcattttcaacaaatggat 395957  T
Q  301 ggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395958 ggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 396018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 26905240 - 26904982
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgt 92  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||        |||||| ||| ||||||||||||||||||||||||    
T  26905240 tgtatgattggcttgaatatagtgaatctaagaacctagcattttgtttgccatgttttttgtttaaaaatgtgtctaattatggtggggatcactttgt 26905141  T
Q  93 gggagatagttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgct 192  Q
    ||||||| |||||||||||||||||||||    |||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  26905140 gggagatggttttggtgattggaagaatccccgaaaattggctaatcatgctacttct---aataattctcatgttgattgtgtgcatatgggttatgct 26905044  T
Q  193 ctcatgaatccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26905043 ctcatgaacccaaaccaaagtattaaggctgcatttgttaatcaaactaagcaaatgaatgt 26904982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 36615800 - 36616058
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgt 92  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||        |||||| ||| ||||||||||||||||||||||||    
T  36615800 tgtatgattggcttgaatatagtgaatctaagaacctagcattttgtttgccatgttttttgtttaaaaatgtgtctaattatggtggggatcactttgt 36615899  T
Q  93 gggagatagttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgct 192  Q
    ||||||| |||||||||||||||||||||    |||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  36615900 gggagatggttttggtgattggaagaatccccgaaaattggctaatcatgctacttct---aataattctcatgttgattgtgtgcatatgggttatgct 36615996  T
Q  193 ctcatgaatccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36615997 ctcatgaacccaaaccaaagtattaaggctgcatttgttaatcaaactaagcaaatgaatgt 36616058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 26285849 - 26285940
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||  ||||| |||||||||||||||||||| | | || |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  26285849 aatgatgtccttttaactcattttcaacaaatggataggaaacgattttcattgtaa-tgtattgtatcaaacaatgttatttcttattttta 26285940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 36475545 - 36475454
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||| ||||||||| |||||||| |||| |||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  36475545 aatgatgtcattttcgctcatttttaacaaatgaatgggagacgattttcattgtag-tgtattgtatcaaacaatgttatttcttattttta 36475454  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 23778338 - 23778242
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa----atgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||||||||||||||||||||||||   |||| ||||| || ||||    ||||||||||||||||||||||||||||||||||||    
T  23778338 aatgatgtcattttagctcattttcaacaaatggataagagaccatttttattgtaatgtaatgtattgtatcaaacaatgttatttcttattttta 23778242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 30136644 - 30136571
Alignment:
Q  283 cattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||||||||||||| | |||| |||||||| | || ||||||||||||||||||||||||||||||||||    
T  30136644 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttattttt 30136571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 30142773 - 30142700
Alignment:
Q  283 cattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||||||||||||| | |||| |||||||| | || ||||||||||||||||||||||||||||||||||    
T  30142773 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttattttt 30142700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 30146195 - 30146122
Alignment:
Q  283 cattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||||||||||||| | |||| |||||||| | || ||||||||||||||||||||||||||||||||||    
T  30146195 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttcttattttt 30146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 24309954 - 24309863
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||  || ||||||||||||||||| | |||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  24309954 aatgatgtgattttgacttattttcaacaaatggataggagacgattttcattgtaa-tgtattgtatcaaacaatattatttcttattttta 24309863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 36478213 - 36478302
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||| |||||| ||||||||||||||||||||   |||||||||| || ||||  ||||||||||||||||| ||||||||||||||||    
T  36478213 tgatgtcattttaactcattttcaacaaatggatcaaagacaattttaattgtaac-gtattgtatcaaacaatattatttcttattttta 36478302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 52308879 - 52308954
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||||| ||||||||||||||||||||||||||| | |||  |||||||| || |||||| ||||||||||||||    
T  52308879 aatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgt-aatgtagtgtatcaaacaatg 52308954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 25070748 - 25070802
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||    
T  25070748 tgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaa 25070802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 36617814 - 36617868
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||    
T  36617814 tgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaa 36617868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 25032184 - 25032220
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||||||||||||||||||||||||||||||||    
T  25032184 aatgtattgtatcaaacaatgttatttcttattttta 25032220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 26903226 - 26903172
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||  |||| |||||||| ||||    
T  26903226 tgatgttattctagctcattttcaacaaatggatgacagacgattttcattgtaa 26903172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 6714403 - 6714487
Alignment:
Q  272 ttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||  ||||||||||||||| |||   ||||||||||||| |||| ||||||  ||||||  |||||||||||||||||||    
T  6714403 ttattttaattcattttcaacaaatagatatgagacaattttcattgtaattgtattacatcaaa-tatgttatttcttattttta 6714487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 38573054 - 38572998
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||| ||| ||||||||||||||||||||||||||| | |||| |||||||| ||||    
T  38573054 aatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaa 38572998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 7856577 - 7856503
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaat 340  Q
    ||||| || ||||||||||||||| ||||||||||| | |||| ||||| ||  | ||||||||||||||||||||    
T  7856577 aatgacgtcattttagctcatttttaacaaatggataggagacgatttttattat-aatgtattgtatcaaacaat 7856503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 45484218 - 45484476
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgt 92  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||        |||||| ||| ||||||||||||||||||||||||    
T  45484218 tgtatgattggcttgaatatagtgaatctaagaacctagcattttgtttgccatgttttttgtttaaaaatgtgtctaattatggtggggatcactttgt 45484317  T
Q  93 gggagatagttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgct 192  Q
    ||||||| |||||||||||||||||||||    |||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  45484318 gggagatggttttggtgattggaagaatccccgaaaattggctaatcatgctacttct---aataattctcatgttgattgtgtgcatatgggttatgct 45484414  T
Q  193 ctcatgaatccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45484415 ctcatgaacccaaaccaaagtattaaggctgcatttgttaatcaaactaagcaaatgaatgt 45484476  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 44873359 - 44873272
Alignment:
Q  269 atgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||| |||||||||||||||||||| | |||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  44873359 atgttattttaactcattttcaacaaatggatagaagacgattttcattgtaa-tgtattgtatcaaacaatattatttcttattttta 44873272  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 29866244 - 29866152
Alignment:
Q  263 ataatgatgttattttagctcattttcaacaaatggatggtaga--caattttcatcgtaaatgtattgtatcaaacaatgttatttcttattt 354  Q
    |||||||||| ||||||||||||||||||||||||||| | |||   ||||||||| || |||||||||||||||||||| |||||||||||||    
T  29866244 ataatgatgtcattttagctcattttcaacaaatggatcggagatgaaattttcattgt-aatgtattgtatcaaacaatattatttcttattt 29866152  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 361
Target Start/End: Complemental strand, 2148463 - 2148367
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||||| |||||||| || ||||||||||||| ||  ||||  |||||||| |||| ||||||| ||||| |||||||||||||||||||||||||    
T  2148463 aatgatgctattttagttcgttttcaacaaatgtataatagattattttcattgtaattgtattgcatcaatcaatgttatttcttatttttagtat 2148367  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 43421591 - 43421498
Alignment:
Q  264 taatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||| ||| ||||||| ||||||||||||||| ||| | |||| ||||| || |||| ||||||| |||||||||||||||| ||||||||||    
T  43421591 taatgttgtaattttagttcattttcaacaaatagatagaagacgatttttattgtaattgtattgcatcaaacaatgttattacttattttta 43421498  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 7681391 - 7681482
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||||  |||||||||||||||||| | | || |||||||| |||| | |||||||||||||||||||||||||| ||||||    
T  7681391 aatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaa-tatattgtatcaaacaatgttatttcttgttttta 7681482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 10381499 - 10381408
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||| ||||||||||||||| |||   |||||||||| || |||| |||||| ||||||||||||||| ||||||||||||    
T  10381499 aatgatgtcattttagttcattttcaacaaatagataagagacaattttgattgtaa-tgtattatatcaaacaatgttacttcttattttta 10381408  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 33235631 - 33235567
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattg 329  Q
    |||| |||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  33235631 aatggtgttattttagctcattttcaacaaatggatgatagatgattttcattgtaaatgtattg 33235567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 11463243 - 11463189
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||    
T  11463243 tgatgttattctagctcattttcaacaaatggatggtagacgattttcattgtaa 11463189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 29841200 - 29841286
Alignment:
Q  270 tgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||||| | |||||||||||||| |||   |||||||||||||  ||| | |||| |||||||||||||||||||||||||||    
T  29841200 tgttattttaacccattttcaacaaatagatatgagacaattttcattataattatattatatcaaacaatgttatttcttattttt 29841286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 24556949 - 24557023
Alignment:
Q  282 tcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||||||||| | |  | |||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  24556949 tcattttcaacaaatggatagaaatcgattttcattgtaa-tgtattgtatcaaacaatgttatttattattttta 24557023  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 7388163 - 7388257
Alignment:
Q  272 ttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtattatct 366  Q
    |||||||||| | |||||||||| ||||  | |||||||||| || |||| ||||||  |||||||||||||| |||||||||||| ||| ||||    
T  7388163 ttattttagcacgttttcaacaattggaaagaagacaatttttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatct 7388257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 45486232 - 45486286
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||    
T  45486232 tgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaa 45486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 32161474 - 32161510
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||||||||||||||||||||||||||||||||    
T  32161474 aatgtattgtatcaaacaatgttatttcttattttta 32161510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 11993699 - 11993774
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||||| |||||||||||||||||||||||| || | |||  | |||||| || |||||| ||||||||||||||    
T  11993699 aatgatgtcattttagctcattttcaacaaatgtataggagatgactttcattgt-aatgtagtgtatcaaacaatg 11993774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 34696984 - 34697055
Alignment:
Q  269 atgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||| |||||| ||||||||||||||||||||   |||| |||||||| || ||| |||||||||||||||||    
T  34696984 atgtcattttatctcattttcaacaaatggatatgagacgattttcattgt-aatatattgtatcaaacaatg 34697055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 299
Target Start/End: Original strand, 31235876 - 31235911
Alignment:
Q  264 taatgatgttattttagctcattttcaacaaatgga 299  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31235876 taatgatgtaattttagctcattttcaacaaatgga 31235911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 36051304 - 36051250
Alignment:
Q  303 tagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||| ||||| || |||||||||||| |||||||||| |||||| |||||||||    
T  36051304 tagacgatttttattgtaaatgtattgaatcaaacaatattatttattattttta 36051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 6978414 - 6978450
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  6978414 aatgtattatatcaaacaatattatttcttattttta 6978450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 18819002 - 18818744
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgt 92  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||        |||||| ||| ||||||||||||||||||||||||    
T  18819002 tgtatgattggcttgaatatagtgaatctaagaacctagcattttgtttgccatgttttttgtttaaaaatgtgtctaattatggtggggatcactttgt 18818903  T
Q  93 gggagatagttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgct 192  Q
    ||||||| |||||||||||||||||||||    |||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  18818902 gggagatggttttggtgattggaagaatccccgaaaattggctaatcatgctacttct---aataattctcatgttgattgtgtgcatatgggttatgct 18818806  T
Q  193 ctcatgaatccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18818805 ctcatgaacccaaaccaaagtattaaggctgcatttgttaatcaaactaagcaaatgaatgt 18818744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 24903770 - 24903512
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgt 92  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||        |||||| ||| ||||||||||||||||||||||||    
T  24903770 tgtatgattggcttgaatatagtgaatctaagaacctagcattttgtttgccatgttttttgtttaaaaatgtgtctaattatggtggggatcactttgt 24903671  T
Q  93 gggagatagttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgct 192  Q
    ||||||| |||||||||||||||||||||    ||||||||||||||||||||||||   |||||  |||||||||||||||||||||||||||||||||    
T  24903670 gggagatggttttggtgattggaagaatccccgaaaattggctaatcatgctacttc---caataattctcatgttgattgtgtgcatatgggttatgct 24903574  T
Q  193 ctcatgaatccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24903573 ctcatgaacccaaaccaaagtattaaggctgcatttgttaatcaaactaagcaaatgaatgt 24903512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 30702768 - 30702678
Alignment:
Q  271 gttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||||||||||||||||| |||| ||||| |||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||    
T  30702768 gttattttagctcattttcgacaactggatagtagacgatttttatcgtcattgtattgtatcaaacaatgttatttcttatttttagtat 30702678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 16461657 - 16461748
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||| ||||||||||||||||||| || | ||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  16461657 aatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgt-aatatattgtatcaaacaatgttatttcttattttta 16461748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 14607790 - 14607867
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgtt 343  Q
    |||||||||||||||||||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  14607790 aatgatgttattttagctcattttcaacaaatggataggagaaaattttcattgt-aatgtattgtatcaaacaatgtt 14607867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 8150815 - 8150905
Alignment:
Q  276 tttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtattatct 366  Q
    ||||||||||||||||||||||||| |||||| ||||| || |||| ||||||| |||||||||||||| ||||| || ||||||| ||||    
T  8150815 tttagctcattttcaacaaatggatagtagacgatttttattgtaattgtattgcatcaaacaatgttaattcttgttgttagtataatct 8150905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 30705360 - 30705276
Alignment:
Q  271 gttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    |||||||||  |||| ||||||||||||||  ||||| ||||| ||      |||||||||||||||||||||||||||||||||||||||    
T  30705360 gttattttaaatcatgttcaacaaatggataatagacgatttttat------tgtattgtatcaaacaatgttatttcttatttttagtat 30705276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 6689283 - 6689202
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttattt 347  Q
    |||||||| ||||||||||| |||||| |||||||| | |||| |||||||| || |||||||||||||||||  ||||||||    
T  6689283 aatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgt-aatgtattgtatcaaaccttgttattt 6689202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 24901757 - 24901708
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcat 316  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  24901757 tgatgttattctagctcattttcaacaaatggatggcagacgattttcat 24901708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 2919968 - 2920004
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||||||||||||||||||||||||||||||||    
T  2919968 aatgtattgtatcaaacaatgttatttcttattttta 2920004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 18816988 - 18816934
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||  |||| |||||||| ||||    
T  18816988 tgatgttattctagctcattttcaacaaatggatgacagacgattttcattgtaa 18816934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 33704182 - 33704117
Alignment:
Q  275 ttttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||||||||||| ||||||| ||| | |||||||||| || || |||||||||||||||||||||    
T  33704182 ttttagctcatttttaacaaatagatagaagacaatttttattgt-aatgtattgtatcaaacaatg 33704117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 1975287 - 1975372
Alignment:
Q  272 ttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||||||| ||||| ||    ||||||||||||| || | ||||||| ||||| ||||||||||| |||||||||    
T  1975287 ttattttaactcattttcatcaaatagacatgagacaattttcattgttattgtattgaatcaaccaatgttatttattattttta 1975372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 21883319 - 21883260
Alignment:
Q  281 ctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||||||||||||||||| | |||| |||||||| || |||| ||||||| ||||||||    
T  21883319 ctcattttcaacaaatggatagaagacgattttcattgt-aatgcattgtattaaacaatg 21883260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 1015028 - 1015286
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgt 92  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||        |||||| ||| ||||||||||||||||||||||||    
T  1015028 tgtatgattggcttgaatatagtgaatctaagaacctagcattttgtttgccatgttttttgtttaaaaatgtgtctaattatggtggggatcactttgt 1015127  T
Q  93 gggagatagttttggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgct 192  Q
    ||||||| |||||||||||||||||||||    |||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  1015128 gggagatggttttggtgattggaagaatccccgaaaattggctaatcatgctacttct---aataattctcatgttgattgtgtgcatatgggttatgct 1015224  T
Q  193 ctcatgaatccaaaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1015225 ctcatgaacccaaaccaaagtattaaggctgcatttgttaatcaaactaagcaaatgaatgt 1015286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 44563643 - 44563555
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatt 353  Q
    ||||||||||||| || |||||||||||||||||||| || ||||||||||| ||||||  |||| ||||||||||||||||| |||||    
T  44563643 aatgatgttatttcagttcattttcaacaaatggatgatatacaattttcattgtaaataaattgcatcaaacaatgttattttttatt 44563555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 8065058 - 8064967
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||| ||||||| ||||| ||||||| | |||| |||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  8065058 aatgatgtcattttcgctcattctcaaccaatggataggagacgattttcattgtaa-tgtattgtatcaaacaatgtaatttcttattttta 8064967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 9539641 - 9539732
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||| |||||||||||||||||||||||||||||   |||  |||||||| || ||||||||||||||||| |||||||||| ||||||||    
T  9539641 aatgatattattttagctcattttcaacaaatggataagagatgattttcattgt-aatgtattgtatcaaacgatgttatttcatattttta 9539732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 10781246 - 10781336
Alignment:
Q  266 atgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| |||||||| |||||||||||||| |||   |||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  10781246 atgatgtcattttagcacattttcaacaaatagatataagacgattttcattgtaa-tgtattgtatcaaacaatattatttcttattttta 10781336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 1406026 - 1405936
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||| |||||||||| ||||||||| | |||  || |||||| ||| | |||||| ||||| |||||||||| |||||||||    
T  1406026 tgatgttattttaactcattttcatcaaatggatagaagaagatattcatcataattatattgtgtcaaataatgttattttttattttta 1405936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 27464286 - 27464375
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttt 355  Q
    ||||| || ||||||| ||||||||||||||| |||  |||||  |||| || || | ||||||||||||||||| |||||||||||||||    
T  27464286 aatgacgtcattttagttcattttcaacaaatagataatagacggttttaattgtga-tgtattgtatcaaacaacgttatttcttatttt 27464375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 29703073 - 29703115
Alignment:
Q  319 taaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  29703073 taaatgtattgaatcaaacaatgttatttattatttttagtat 29703115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 23347896 - 23347843
Alignment:
Q  304 agacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||| ||||  |||||| |||||||||||||||||||||| ||||    
T  23347896 agacaattttcattgtaagcgtattgcatcaaacaatgttatttcttatattta 23347843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 47631287 - 47631234
Alignment:
Q  303 tagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    ||||||||| | || |||||||||||| ||||||||||||||||| ||||||||    
T  47631287 tagacaattattattgtaaatgtattgaatcaaacaatgttatttattattttt 47631234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 1017042 - 1017088
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaatttt 313  Q
    |||||||||| ||||||||| ||||||||||||||| |||| |||||    
T  1017042 tgatgttattctagctcattctcaacaaatggatggcagacgatttt 1017088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 39786023 - 39785776
Alignment:
Q  14 ttgattatagtgaatctaaggacctggcattttgtttgccatgtt--------aaaaat-tgtgtaattatggtggggatcactttgtgggagatagttt 104  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||        |||||| ||| ||| |  |||||||||||||||||||||||| ||||    
T  39786023 ttgattatagtgaatctaaagacctagcattttgtttgccatgttttttgtttaaaaatgtgtttaagtccggtggggatcactttgtgggagatggttt 39785924  T
Q  105 tggtgattggaagaatcttataaaattggctaatcatgctacttcttccaatagctctcatgttgattgtgtgcatatgggttatgctctcatgaatcca 204  Q
    ||||||||||||||||     || |||| ||||||||||||||||    ||||  ||||||||||||||||||||||||||||||||||||||||| |||    
T  39785923 tggtgattggaagaatgcccaaagattgactaatcatgctacttcg---aataattctcatgttgattgtgtgcatatgggttatgctctcatgaaccca 39785827  T
Q  205 aaccaaagtattaaggctgcgtttgttaatcaaactaagcaaatgaatgtc 255  Q
    |||||||||||||| ||| | |||| |||||||| ||||||||||||||||    
T  39785826 aaccaaagtattaacgctacatttgctaatcaaaataagcaaatgaatgtc 39785776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 39785576 - 39785482
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagt 359  Q
    |||| ||||||||||||||||||| ||||||||||| |||||| |||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  39785576 aatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaattgtattgcatcaaacaatgttatttcttatttttagt 39785482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 25233020 - 25232934
Alignment:
Q  270 tgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  25233020 tgttattttaactcattttcaacaaatggataggagacaattttcattgtaattatattgtatcaaacaatgttatttcttattttt 25232934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 26824462 - 26824557
Alignment:
Q  262 cataatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||| |||||||| |||||||||||||||| ||| | |||| |||||||| |||| ||||||| |||||| ||| ||||||||||||||||    
T  26824462 cataatgatattattttacctcattttcaacaaatcgataggagacgattttcattgtaattgtattgcatcaaataatattatttcttattttta 26824557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 2945423 - 2945516
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagac--aattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||| ||||||||||||||| ||| | ||||   ||||| || || |||||||||||||||||||||||||||||||||||||    
T  2945423 aatgatgtcattttaggtcattttcaacaaatagataggagacgagatttttattgt-aatgtattgtatcaaacaatgttatttcttattttta 2945516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 10512080 - 10512148
Alignment:
Q  265 aatgatgttattttagctcattttcaacaa----atggatggtagacaattttcatcgtaaatgtattg 329  Q
    |||| |||||||||||||||||||||||||    ||||||||||||| |||||||| ||||||||||||    
T  10512080 aatggtgttattttagctcattttcaacaaatggatggatggtagacgattttcattgtaaatgtattg 10512148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 34346836 - 34346926
Alignment:
Q  266 atgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| ||||| | |||||||| ||||||||||   |||| ||||||| | | |||||||||||| ||||||||||||||||||||||||    
T  34346836 atgatgtcattttcgttcattttccacaaatggatatgagacgattttca-ctttaatgtattgtataaaacaatgttatttcttattttta 34346926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 39781035 - 39781089
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||    
T  39781035 tgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaa 39781089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 27080493 - 27080405
Alignment:
Q  266 atgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| |||||||||||||||||||||||  || | |||| ||| | || ||   ||||||||||||||||||| |||||||||||||||    
T  27080493 atgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt---tgtattgtatcaaacaatgatatttcttattttta 27080405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 27197808 - 27197896
Alignment:
Q  266 atgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| |||||||||||||||||||||||  || | |||| ||| | || ||   ||||||||||||||||||| |||||||||||||||    
T  27197808 atgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt---tgtattgtatcaaacaatgatatttcttattttta 27197896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 38300406 - 38300481
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||| ||| ||||||||||||||||||||||||||| | |||| |||||||| || |||  ||||||||||||||||    
T  38300406 aatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgt-aatacattgtatcaaacaatg 38300481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 16841044 - 16841111
Alignment:
Q  290 aacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| ||| | ||||||||||||| |||| ||||||| |||||| ||| ||||||||||||||||    
T  16841044 aacaaatagataggagacaattttcattgtaattgtattgcatcaaaaaatattatttcttattttta 16841111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 30074656 - 30074749
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagac--aattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||| || ||||||||||||||||| | ||||   ||||| || || ||||||||||||||||| ||||| |||||||||||||    
T  30074656 aatgatgtcattttaacttattttcaacaaatggataggagacgagattttgattgt-aatgtattgtatcaaacgatgttgtttcttattttta 30074749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 32221863 - 32221956
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaa--ttttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||| |||||||||||||||||||| | |||| |  || |||  |||| | ||||||| |||||||||||||||||||||||||    
T  32221863 aatgatgtcattttaactcattttcaacaaatggataggagacgagattctcaatgtaatt-tattgtaccaaacaatgttatttcttattttta 32221956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 33255021 - 33255063
Alignment:
Q  319 taaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  33255021 taaatgtattgaatcaaacaatgttatttattatttttagtat 33255063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 40716946 - 40717008
Alignment:
Q  270 tgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtat 332  Q
    |||||||||| ||||||||||||||||||||   |||||||||| || |||| ||||||||||    
T  40716946 tgttattttacctcattttcaacaaatggatatgagacaatttttattgtaattgtattgtat 40717008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 43265971 - 43266025
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||||||||| |||  |||||||| ||||    
T  43265971 tgatgttattctagctcattttcaacaaatggatggcagatgattttcattgtaa 43266025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 26787348 - 26787263
Alignment:
Q  272 ttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||| ||||||||||||| ||   | |||||||| || |||| ||||||| || ||||||||||||||||||| ||||    
T  26787348 ttattttatctcgttttcaacaaatgaataagacacaattttgattgtaattgtattgcattaaacaatgttatttcttatcttta 26787263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 46090226 - 46090314
Alignment:
Q  268 gatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||| ||||||  |||||||||||||||| ||   |||| |||||||| |||| ||||| ||| ||||||||||||||| |||||||||    
T  46090226 gatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaa-tgtatcgtaccaaacaatgttattttttattttta 46090314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 24658501 - 24658426
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||||| |||||| |||||||||||||||||||| | | || |||||||| || ||| |||||||||||| ||||    
T  24658501 aatgatgtcattttaactcattttcaacaaatggataggaaacgattttcattgt-aatatattgtatcaaagaatg 24658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 33941710 - 33941746
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33941710 aatgtattttatcaaacaatgttatttcttattttta 33941746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 6051187 - 6051137
Alignment:
Q  264 taatgatgttattttagctcattttcaacaaatggatggtagacaattttc 314  Q
    |||||||||||||||| ||||||||||||||||| ||| || || ||||||    
T  6051187 taatgatgttattttatctcattttcaacaaatgaatgatatactattttc 6051137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 2158708 - 2158617
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||| ||||||||||||||||||||||||||||| | |||| |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2158708 aatgatattattttagctcattttcaacaaatggataggagacgattttcattgtaa-tgtattgtatcaaacaatgttatttcttattttta 2158617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 2814067 - 2813976
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||||||||||||||||||||||||||   |||| | |||||| || |||||||||||||||||||| ||||||| ||||||||    
T  2814067 aatgatgttattttagctcattttcaacaaatggatatgagacgactttcattgt-aatgtattgtatcaaacaattttatttcatattttta 2813976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 4377313 - 4377223
Alignment:
Q  266 atgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| |||||| ||||||||||||||||||||   |||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  4377313 atgatgtcattttaactcattttcaacaaatggatataagacgattttcattgtaa-tgtattgtatcaaacaatattatttcttattttta 4377223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 1112071 - 1111989
Alignment:
Q  271 gttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatt 353  Q
    |||||||||| |||||||||||||||||||   |||||||||| || |||| ||||| | |||||||||||||||||||||||    
T  1112071 gttattttagatcattttcaacaaatggataagagacaattttgattgtaattgtatcgcatcaaacaatgttatttcttatt 1111989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 356
Target Start/End: Complemental strand, 36247905 - 36247816
Alignment:
Q  266 atgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    ||||||| |||||||||||||||||||||||||||   |||| |||||||| || |||||||||||||||||||| | | |||||||||||    
T  36247905 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgt-aatgtattgtatcaaacaatatgaattcttattttt 36247816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 33518107 - 33518016
Alignment:
Q  266 atgatgttattttagctcatttt-caacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||| ||||||||||||||| | ||||||||||   |||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  33518107 atgatgtcattttagctcatttttcgacaaatggatataagacgattttcattgtaa-tgtattgtatcaaacaatattatttcttattttta 33518016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 30804436 - 30804384
Alignment:
Q  309 attttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||||||||||    
T  30804436 atttttattgtaaatgtattgaatcaaacaatgttatttattatttttagtat 30804384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 50723229 - 50723265
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||||||||||||||||||||||||    
T  50723229 aatgtattatatcaaacaatgttatttcttattttta 50723265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 8904326 - 8904365
Alignment:
Q  19 tatagtgaatctaaggacctggcattttgtttgccatgtt 58  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  8904326 tatagtgaatctaagaacctagcattttgtttgccatgtt 8904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 35390530 - 35390460
Alignment:
Q  291 acaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    |||| ||||| |||||  ||||| || |||| | ||||| ||||||||||||||||| |||||||||||||    
T  35390530 acaagtggatagtagatgatttttattgtaattttattgcatcaaacaatgttatttattatttttagtat 35390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 46671979 - 46671925
Alignment:
Q  303 tagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||| ||  ||||||||||| |||||||||| |||||| |||||||||    
T  46671979 tagacaatttttattttaaatgtattgaatcaaacaatattatttattattttta 46671925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 25819149 - 25819064
Alignment:
Q  271 gttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  25819149 gttattttagcttattttcaacaaatggataggagacaattttcatcgt-aatgtattgtttcaaacaatgttatttcctattttta 25819064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 39509232 - 39509146
Alignment:
Q  270 tgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||| || ||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  39509232 tgttatttcagttcattttcaacaaattgatggaagacaattttcattgtaattgtattgtatcaaacaatgttatatcttattttt 39509146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 5569091 - 5568999
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||| |||||||||| ||||||||||||||||||||   ||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||    
T  5569091 aatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaattgtattgcatcaaccaatgttatttcttattttta 5568999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 33824761 - 33824853
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||||| ||||||||||||||||| || | |||| |||||||| |||| |||| || |||||||||||||||||||||||||||    
T  33824761 aatgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaattgtactgcatcaaacaatgttatttcttattttta 33824853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 26459761 - 26459679
Alignment:
Q  274 attttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||||||||||||||||| | | || |||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  26459761 attttagctcattttcaacaaatggataggacacgattttcattgtaa-tgtattgtatcaaacaatgttctttcttattttta 26459679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 43144630 - 43144551
Alignment:
Q  276 tttagctcattttcaacaaatggatggtagac--aattttcatcgtaaatgtattgtatcaaacaatgttatttcttattt 354  Q
    ||||||||||||||||||||||||| | |||   ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  43144630 tttagctcattttcaacaaatggattggagaagaaattttcattgtaa-tgtattgtatcaaacaatgttatttcttattt 43144551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 980176 - 980268
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    ||||||||||||||||  |||||||||||||| |||  ||||  ||||| || |||| ||||||  |||||||||||||||||||||||||||    
T  980176 aatgatgttattttagtacattttcaacaaatagataatagatgatttttattgtaattgtattacatcaaacaatgttatttcttattttta 980268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 7607289 - 7607364
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||||| ||||||||||||||||||||||||||| | |||| ||||| || || |||||||||||||||||||||    
T  7607289 aatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgt-aatgtattgtatcaaacaatg 7607364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 36745015 - 36744924
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| |||||||||||||||||||||||||||   |||| ||||| || || ||| |||||||||||||||| |||||||||| |||||    
T  36745015 aatgatgtcattttagctcattttcaacaaatggatataagacgattttaattgt-aatttattgtatcaaacaatattatttcttactttta 36744924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 34751105 - 34751196
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||||||||||||||||||| ||    |||  ||||||||  ||| |||||||||||||||||||||| ||||||||||||    
T  34751105 aatgatgtcattttagctcattttcaacaaatagacacgagatgattttcattttaa-tgtattgtatcaaacaatgttacttcttattttta 34751196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 17076651 - 17076705
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||    
T  17076651 tgatgttattctagctcattttcaacaaatgaatggtagacgattttcattgtaa 17076705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 36633917 - 36633953
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||||||||||||||||||||| ||||||||||    
T  36633917 aatgtattgtatcaaacaatgttattacttattttta 36633953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 14701129 - 14701182
Alignment:
Q  270 tgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaat 323  Q
    ||||||||||||||||||||| ||||||| || ||||| |||||| | ||||||    
T  14701129 tgttattttagctcattttcatcaaatgggtgatagactattttctttgtaaat 14701182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 26459909 - 26459853
Alignment:
Q  2 tgtatgatcggcttgattatagtgaatctaaggacctggcattttgtttgccatgtt 58  Q
    |||||||| || |||| ||| |||||||||||||||| ||||||| |||| ||||||    
T  26459909 tgtatgattggattgaatatggtgaatctaaggacctagcattttttttgtcatgtt 26459853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 29670048 - 29669996
Alignment:
Q  269 atgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||||||| ||||||||||||||  | | ||||||||||||| ||||    
T  29670048 atgttattttagcttattttcaacaaatgattagaagacaattttcattgtaa 29669996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 461355 - 461446
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||| ||||||||||||||||||||||| ||| | |||| |||||||| || ||||||||||| |||||||||||| ||||||||||||    
T  461355 aatgatgtcattttagctcattttcaacaaatagataggagacgattttcattgt-aatgtattgtaccaaacaatgttacttcttattttta 461446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 32033050 - 32032961
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||| |||||| |||||||| ||||||||||| |  ||| ||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  32033050 tgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaa-tgtattgtatcaaacaatgttatttcttattttta 32032961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 38417860 - 38417776
Alignment:
Q  273 tattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||  ||||||||||||||||||| | ||||||||||||  |||| ||||||| ||||| ||| |||||||||||||||||    
T  38417860 tattttaaatcattttcaacaaatggataggagacaattttcactgtaattgtattgcatcaaccaaagttatttcttattttta 38417776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 7700417 - 7700327
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 356  Q
    |||||||| |||||||||||||||||||| ||| ||   |||  |||||||| |  ||||||||||||||||||||||||||||||||||||    
T  7700417 aatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattg-caatgtattgtatcaaacaatgttatttcttattttt 7700327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 34190104 - 34190029
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatg 341  Q
    |||||| | ||||||| ||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||||    
T  34190104 aatgatatcattttagttcattttcaacaaatggataggagacgattttcattgt-aatgtattgtatcaaacaatg 34190029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 27447736 - 27447823
Alignment:
Q  270 tgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||||||||||| ||| ||| |||| |||   ||||||||||||| |||| ||||||  |||||||||| ||||||||||||||||    
T  27447736 tgttattttagctcgtttccaataaatagatatgagacaattttcattgtaattgtattacatcaaacaatattatttcttattttta 27447823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 4075518 - 4075464
Alignment:
Q  267 tgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaa 321  Q
    |||||||||| ||||||||||||||||||| ||||| |||| |||||||| ||||    
T  4075518 tgatgttattctagctcattttcaacaaattgatggcagacgattttcattgtaa 4075464  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 37623585 - 37623627
Alignment:
Q  319 taaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  37623585 taaatgtattgaatcaaacaatgttatttattatttttagtat 37623627  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 11562185 - 11562149
Alignment:
Q  321 aatgtattgtatcaaacaatgttatttcttattttta 357  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11562185 aatgtactgtatcaaacaatgttatttcttattttta 11562149  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 18703693 - 18703763
Alignment:
Q  272 ttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttattt 347  Q
    ||||||| ||||||||| ||||||||||| | ||||||||||||| |||     |||| |||||||||||||||||    
T  18703693 ttatttttgctcatttttaacaaatggataggagacaattttcattgta-----attgcatcaaacaatgttattt 18703763  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 8974506 - 8974464
Alignment:
Q  319 taaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    ||||||||||| ||||||||||||||||| | |||||||||||    
T  8974506 taaatgtattgaatcaaacaatgttatttataatttttagtat 8974464  T

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Target: scaffold0311 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 871 - 962
Alignment:
Q  265 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttatttttagtat 361  Q
    |||||||||| |||||||||||||||||||  | || |||||| |||||||| |||| |||||||      ||||||||||||||||||||||||||    
T  871 aatgatgttagtttagctcattttcaacaatcgaatagtagacgattttcattgtaattgtattg-----cacaatgttatttcttatttttagtat 962  T

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