View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1332_low_9 (Length: 403)
Name: NF1332_low_9
Description: NF1332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1332_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 194 - 375
Target Start/End: Original strand, 51523949 - 51524130
Alignment:
| Q |
194 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagtcatctctatttta |
293 |
Q |
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| T |
51523949 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagtcatctctatttta |
51524048 |
T |
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| Q |
294 |
tcacgcttcactaatgtctttggtcactctcgcacctcaaacgccgtttcggattgcctcgatttacttgacatgtccttag |
375 |
Q |
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| T |
51524049 |
tcacgcttcactaatgtctttggtcactctcgcacctcaaacgccgtttcggattgcctcgatttacttgacatgtccttag |
51524130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 51523771 - 51523893
Alignment:
| Q |
16 |
ataaaaagcatagaattagtgacacttacttactcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaac |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51523771 |
ataaaaaccatagaattagtgacacttacttactcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaac |
51523870 |
T |
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| Q |
116 |
aacactctcaataactacattca |
138 |
Q |
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| T |
51523871 |
aacactctcaataactacattca |
51523893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 51530109 - 51530192
Alignment:
| Q |
47 |
actcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacactctcaataac |
130 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51530109 |
actcgtcgtgtctattacatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacactctcaataac |
51530192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 51530253 - 51530355
Alignment:
| Q |
194 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagtcatctctatttta |
293 |
Q |
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|||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| | ||||||| ||||||||||||||||||| ||| |||||| |
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| T |
51530253 |
caataactttgttggttcatccctcagagtttctcccaccaaattttccaactctgccaatgaagttaaaaccgttttacaaaaagtcacctccatttta |
51530352 |
T |
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| Q |
294 |
tca |
296 |
Q |
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||| |
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| T |
51530353 |
tca |
51530355 |
T |
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