View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13330_high_6 (Length: 369)

Name: NF13330_high_6
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13330_high_6
NF13330_high_6
[»] chr4 (14 HSPs)
chr4 (1-350)||(35252718-35253066)
chr4 (1-350)||(35240466-35240815)
chr4 (28-216)||(35246229-35246414)
chr4 (27-140)||(35270789-35270902)
chr4 (27-224)||(35286411-35286606)
chr4 (28-184)||(35277398-35277554)
chr4 (40-162)||(35282967-35283089)
chr4 (253-349)||(35245931-35246027)
chr4 (246-314)||(35270037-35270105)
chr4 (27-114)||(35237675-35237762)
chr4 (246-311)||(35277094-35277159)
chr4 (271-314)||(35274830-35274873)
chr4 (12-58)||(35275093-35275139)
chr4 (246-311)||(35282681-35282746)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 35253066 - 35252718
Alignment:
Q  1 tctggtcggacagacgatgcatattcgagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  35253066 tctggtcggacagacgatgcatattcgagtatcaatcaaacgggaagaggtttcagtctgtcatattccatcctcgataccctaacgtcttagttgttgc 35252967  T
Q  101 tggttttcaggtaaacacttccctgcgcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttatacagttagact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35252966 tggttttcaggtaaacacttccctgcgcttctattatgatcattaagtcccatctatatctctgtt-aagtaaatgttacagaggttatacagttagact 35252868  T
Q  201 cagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35252867 cagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaatt 35252768  T
Q  301 gttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35252767 gttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatg 35252718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 35240815 - 35240466
Alignment:
Q  1 tctggtcggacagacgatgcatattcgagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgc 100  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||| | || |||||||||||    
T  35240815 tctggtcggacggacaatgcatattcgagtatcaatcagacgggaagaggtttcagtctatcatattccatcctcgatatcctgacgtcttagttgttgc 35240716  T
Q  101 tggttttcaggtaaacacttccctgcgcttctattat--gatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttatacagttaga 198  Q
    |||||||||||||||| |||||||  |||||||||||  |||  ||| |||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  35240715 tggttttcaggtaaactcttccctctgcttctattatatgattgttgtgtcccatctatatctccgtttaagtaaatgttacagaggtta--cagttaga 35240618  T
Q  199 ctcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240617 ctcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaa 35240518  T
Q  299 ttgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatg 350  Q
    ||||||| | |||||||   | ||| ||||| |||||||| |||||||||||    
T  35240517 ttgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgatg 35240466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 35246414 - 35246229
Alignment:
Q  28 agtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcg 127  Q
    |||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||   || |||||| ||| ||||||||||||||| |||| |||  |    
T  35246414 agtatccatcaaatgggaacaggtttcagtctgtcatattccatcctcgataccctggcgtcttagttattggtggttttcaggtaaatactttcctctg 35246315  T
Q  128 cttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacc 216  Q
    || |||||||||||  || || |||||||||||||  ||||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  35246314 ctactattatgatc-gtgtgtgccatctatatctccatttaagtaactgttacagaggt--tacacttagactcagtcatagttgaacc 35246229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 35270902 - 35270789
Alignment:
Q  27 gagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgc 126  Q
    ||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||| || |||||| ||| | |||||||||||||||||||||| |    
T  35270902 gagtatccatcaaatgggaagaggtttcagtccgtcatattccatcctcgataccctaacgtcttagttattggttgttttcaggtaaacacttccctcc 35270803  T
Q  127 gcttctattatgat 140  Q
    ||||| ||||||||    
T  35270802 gcttccattatgat 35270789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 35286606 - 35286411
Alignment:
Q  27 gagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgc 126  Q
    ||||||| ||| || ||||||||||||  ||| |||||||||||||||||||||| ||| || |||||||||| |||||||||||||||| ||||||||     
T  35286606 gagtatccatcgaaagggaagatgtttatgtccgtcatattccatcctcgataccgtaacgtcttagttgttggtggttttcaggtaaactcttccctgt 35286507  T
Q  127 gcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacctattaaaa 224  Q
    ||||| |||||| |||| | ||  | | ||||| |   |||| |||| |||||| |||||  |||| |||| ||||||||||||||||||| ||||||    
T  35286506 gcttccattatgttcatggtgtttcttttatatatacttttatgtaactgttactgaggt--tacatttagcctcagtcatagttgaaccttttaaaa 35286411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 35277554 - 35277398
Alignment:
Q  28 agtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcg 127  Q
    |||||| |||||||||||| |  |||||||| |||||||||||||||| ||||| |||||| ||||||||||  ||||||||||||||| |||||||  |    
T  35277554 agtatccatcaaacgggaataattttcagtcggtcatattccatcctcaataccgtaatgtcttagttgttggcggttttcaggtaaactcttccctctg 35277455  T
Q  128 cttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagag 184  Q
    |||| ||||||||||| | ||| | ||||||||||  ||||||| | ||||| ||||    
T  35277454 cttccattatgatcatagtgtctcttctatatctccttttaagtgactgttatagag 35277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 35283089 - 35282967
Alignment:
Q  40 acgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcgcttctattatga 139  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||| || ||||||||   ||| |||||||||||| ||| |||  ||||| |||||||    
T  35283089 acgggaagaggtttcagtctgtcatattccatcctcgacaccgtaacgtcttagttgtgagtggatttcaggtaaactctttcctcagcttccattatga 35282990  T
Q  140 tcattgagtcccatctatatctc 162  Q
    |||| | ||| | ||||||||||    
T  35282989 tcatggtgtctcttctatatctc 35282967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 35246027 - 35245931
Alignment:
Q  253 aatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgat 349  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||||  | | |||||  |||||||||| |||||||||||    
T  35246027 aatattaagtaaataatcttcggacaacttattgcagtgcttggaatggttgattattgagaacgggcaaagatttaataaaggaagtgcctctgat 35245931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 35270105 - 35270037
Alignment:
Q  246 ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgaga 314  Q
    ||||||||| || ||||||||||| |||| |||| ||||| |||||| |||||||||||||||||||||    
T  35270105 ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga 35270037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 35237762 - 35237675
Alignment:
Q  27 gagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaa 114  Q
    |||||||||||||| ||||||| |||||||||  |||| ||||||||| ||||||||||||   ||||| ||| ||| ||||||||||    
T  35237762 gagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttattggtggatttcaggtaa 35237675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 35277159 - 35277094
Alignment:
Q  246 ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg 311  Q
    ||||||| || | |||||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  35277159 ttgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgactcttg 35277094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 35274873 - 35274830
Alignment:
Q  271 tgtggacaacttattgcagtgcttggaattgttgattcttgaga 314  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  35274873 tgtgtacaatttattgcagtgcttggaaatgttgattcttgaga 35274830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 35275139 - 35275093
Alignment:
Q  12 agacgatgcatattcgagtatcaatcaaacgggaagatgtttcagtc 58  Q
    ||||||||||||| |||||||| |||||| ||||||| |||||||||    
T  35275139 agacgatgcatatacgagtatccatcaaatgggaagaggtttcagtc 35275093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 35282746 - 35282681
Alignment:
Q  246 ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg 311  Q
    |||||||||| | ||| || ||||||||| |||| |||||||||||| ||||||||| || |||||    
T  35282746 ttgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggactcttg 35282681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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