View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13330_high_8 (Length: 304)
Name: NF13330_high_8
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 44142533 - 44142255
Alignment:
| Q |
21 |
aaaattattttagaacttggatttatggttttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaac |
120 |
Q |
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| T |
44142533 |
aaaattattttagaacttggatttatggttttattagggctataaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaac |
44142434 |
T |
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| Q |
121 |
atagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcatt |
220 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44142433 |
atggttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcact |
44142334 |
T |
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| Q |
221 |
caccagtgatccctcagggagacataattcaccccatttcctacctttttctccttacccttatctttgatgatgtcca |
299 |
Q |
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| T |
44142333 |
caccactgatccctcagggagacataattcaccccatttcctacctttttctccttacccttatcttttatgatttcca |
44142255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 50063196 - 50062907
Alignment:
| Q |
21 |
aaaattattttagaacttggatttatggttttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50063196 |
aaaattattttagaacttggatttatggttttattagggctgtaaagaatttccatagctccactttgttttctgggtgcaaatttcatttactctgaac |
50063097 |
T |
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| Q |
121 |
atagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcatt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
50063096 |
atagttttattaatttattttcttactacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcatagttcact |
50062997 |
T |
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| Q |
221 |
caccagtgatccctcagggaga-----------cataattcaccccatttcctacctttttctccttacccttatctttgatgatgtcca |
299 |
Q |
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||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
50062996 |
caccactgatccctcagggtgacgtccacacttcataattcaccccatttccaacctttttctccttacccttatcttttatgatttcca |
50062907 |
T |
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