View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13330_low_1 (Length: 670)
Name: NF13330_low_1
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_low_1 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 654
Target Start/End: Complemental strand, 33951589 - 33950956
Alignment:
| Q |
17 |
aagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcgtcatttgcagggaatagcctacaatgttttcctatgatgtaattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33951589 |
aagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcgtcatttgcagggaatagcctacaatgttttcctatgatgtaattt |
33951490 |
T |
|
| Q |
117 |
ggaaaataatgaaccgctcctaaacataatattctctaaggacaaactatctgcaatcagtgagaatgaatacagctttaagctgctctacacataagaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33951489 |
ggaaaataatgaaccgctcctaaacataatattctctaaggacaaactatctgcaatcaatgagaatgaatacagctttaagctgctctacacataagaa |
33951390 |
T |
|
| Q |
217 |
atatttatatgaaaaaattcttatgtccttatttccatccattctttactnnnnnnncatccatatattattgagtaccatctaaggcaatgatatatat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33951389 |
atatttatatgaaaaaattcttatgtccttatttccatccattctttactaaaaaaacatccatatattattgagtaccatctaaggcaatgatatatat |
33951290 |
T |
|
| Q |
317 |
aattcatgtataagttcatgtttaattagaatcaaattgaatttggcaaaattatggtggcagcgtaattttttctttcaagttttcatgattctgtcta |
416 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33951289 |
aattcatgtataagttcatgttta----gaatcaaattgaatttggcaaaattatggtggcagcgtaattttttctttcaagttttcatgattctgtcta |
33951194 |
T |
|
| Q |
417 |
acacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtagccagagtggttt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33951193 |
acacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtagccagagtggttt |
33951094 |
T |
|
| Q |
517 |
tccccaatcctcctaaaccagttaacacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaa |
616 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33951093 |
tccccaatcctcctaaaccagtcaacacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatggtatatccaacccaacagtgaa |
33950994 |
T |
|
| Q |
617 |
ttttggattttcaggaacatcgaaaggacgcttaaaaa |
654 |
Q |
| |
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|||| ||||||||||||||| |||||||||||| |||| |
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| T |
33950993 |
tttttgattttcaggaacattgaaaggacgcttgaaaa |
33950956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 628
Target Start/End: Complemental strand, 33974190 - 33973577
Alignment:
| Q |
17 |
aagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcgtcatttgcagggaatag------cctacaatgttttcctatgatg |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||| |
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| T |
33974190 |
aagaaagttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcaacatttgcagaggatagaagatgcctacaatgttttcctatgatg |
33974091 |
T |
|
| Q |
111 |
taatttggaaaataatgaaccgctcctaaacataatattctctaaggacaaactatctgcaatcagtgagaatgaatacagctttaagctgctctacaca |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||| |
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| T |
33974090 |
taatttggaaaataatgaactgctcctaaacataatattctctaaggacaaactatctacaatcagcgagcatgaataccgctttaagctgctctacaca |
33973991 |
T |
|
| Q |
211 |
taagaaatatttatatgaaaaaattcttatgtccttatttccatccattctttactnnnnnnncatccatatattattgagtaccatctaaggcaatgat |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33973990 |
taagaaatatttatatgaaaaaattcttatgtccttatttccatccattctttactaaaaaaacatccatatattattgagtaccatctaaggcaatgat |
33973891 |
T |
|
| Q |
311 |
atatataattcatgtataagttcatgtttaattagaatcaaattgaatttggcaaaattatggtggcagcgtaattttttctttcaagttttcatgattc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33973890 |
atatataattcatgtataagttcatgttta----gaatcaaattgaatttggcaaaattatggtggcagcgtaattttttctttcaagttttcatgattc |
33973795 |
T |
|
| Q |
411 |
tgtctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtagccagag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33973794 |
tgtctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtagccagag |
33973695 |
T |
|
| Q |
511 |
tggttttccccaatcctcctaaaccagttaacacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatgctatatccaacccaac |
610 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33973694 |
tggttttccccaatcctcctaaaccagtcaacacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatggtatatccaacccaac |
33973595 |
T |
|
| Q |
611 |
agtgaattttggattttc |
628 |
Q |
| |
|
|||||||||||||||||| |
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| T |
33973594 |
agtgaattttggattttc |
33973577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 342 - 649
Target Start/End: Complemental strand, 33990749 - 33990446
Alignment:
| Q |
342 |
ttagaatcaaattgaatttggcaaaattatggtggcagcgtaattttttctttcaagttttcatgattctgtctaacacactgctaatccaaacatgcat |
441 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||| |||||||||| |||||||| ||||| |||||||||||| |||||||||||||||||| |
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|
| T |
33990749 |
ttagaaacaaagtgaatttgacaaaattatggtggcagtgtaatttttt---tcaagtttctttgattatgtctaacacaccgctaatccaaacatgcat |
33990653 |
T |
|
| Q |
442 |
gagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtagccagagtggttttccccaatcctcctaaaccagttaa |
541 |
Q |
| |
|
|||| | | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| || || || |
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|
| T |
33990652 |
gagaga-gccaaagaggatttatgacttaccattaacttcttgatcccaacaaagctttgtagccaaagtggttttccctaatcctcctaagcccgtcaa |
33990554 |
T |
|
| Q |
542 |
cacaagtgtggagctaccacccctcagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaa |
641 |
Q |
| |
|
|||||| |||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33990553 |
cacaagggtggagctaccatcccttataagctccattttcaacttgctaaatggtatatccaacccaacagtgaattttggattttcaggaacatcgaaa |
33990454 |
T |
|
| Q |
642 |
ggacgctt |
649 |
Q |
| |
|
|||||||| |
|
|
| T |
33990453 |
ggacgctt |
33990446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 33991109 - 33990867
Alignment:
| Q |
17 |
aagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcgtcatttgcagggaatag------cctacaatgttttcctatgatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
33991109 |
aagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcaacatttgcagagaatagaagatgcctacaatgttttcctatgatg |
33991010 |
T |
|
| Q |
111 |
taatttggaaaataatgaaccgctcctaaacataatattctctaaggacaa----actatctgcaatcagtgagaatgaatacagctttaagctgctcta |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||| |||||||||||||||| |
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|
| T |
33991009 |
taatttggaaaataatgaacggctcctaaacataatattctctaaggacaaactaactatctacaatcagcgagcatgaataccgctttaagctgctcta |
33990910 |
T |
|
| Q |
207 |
cacataagaaatatttatatgaaaaaattcttatgtccttattt |
250 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
33990909 |
cacacaagaaatatttatat-aaaaaattcttatttccttattt |
33990867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 461 - 656
Target Start/End: Complemental strand, 33911914 - 33911719
Alignment:
| Q |
461 |
ttatgacttaccattaacttcttcatcccaacaaagctttgtagccagagtggttttccccaatcctcctaaaccagttaacacaagtgtggagctacca |
560 |
Q |
| |
|
|||||||||||| ||||||| || |||| |||| ||||||||||||| ||||||||| |||| ||| ||||||||||| |||| ||| || || |||||| |
|
|
| T |
33911914 |
ttatgacttacccttaacttgttgatccaaacacagctttgtagccaaagtggtttttcccattccacctaaaccagtcaacaaaagagtagatctacca |
33911815 |
T |
|
| Q |
561 |
cccctcagaagctccattttcaacttgct-aaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaaaaatg |
656 |
Q |
| |
|
|||| ||||| ||||| ||| ||| | || ||| | |||||| |||||||| |||| ||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
33911814 |
tccctgagaagttccatcttcggcttaatcaattgcga-atccaaaccaacagtaaattcaggattttcaggaacaccaaaaggacccttaaaaatg |
33911719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 651
Target Start/End: Complemental strand, 33939575 - 33939390
Alignment:
| Q |
466 |
acttaccattaacttcttcatcccaacaaagctttgtagccagagtggttttccccaatcctcctaaaccagttaacacaagtgtggagctaccacccct |
565 |
Q |
| |
|
||||||| ||||||| |||||| |||| ||||||||||||||||| ||||| |||| ||| || | |||||| |||| ||| || || ||||| | || |
|
|
| T |
33939575 |
acttacccttaacttgatcatccaaacacagctttgtagccagagttgtttttcccattccacccagaccagtcaacaaaagagtagatctaccttctct |
33939476 |
T |
|
| Q |
566 |
cagaagctccattttcaacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggacgcttaa |
651 |
Q |
| |
|
|||| |||| |||||||| | ||| | |||||| |||||||| |||| |||||| |||||||||| ||||||| ||||| |
|
|
| T |
33939475 |
gagaatttccaccttcaacttaatcaattgcaaatccaaaccaacagtaaattcaggatttgcaggaacatcaaaaggacccttaa |
33939390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 413 - 532
Target Start/End: Original strand, 8278802 - 8278920
Alignment:
| Q |
413 |
tctaacacactgctaatccaaacatgcatgagataaggcaaaaaggatttatgacttaccattaacttcttcatcccaacaaagctttgtagccagagtg |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | |||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
8278802 |
tctaacacactgctaatccaaacatgcatgagaga-gccaaagaggatttatcacttacccttaacttgttcatcccaacaaagctttgtagccaaagtg |
8278900 |
T |
|
| Q |
513 |
gttttccccaatcctcctaa |
532 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8278901 |
gttttccccaatcctcctaa |
8278920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 482 - 645
Target Start/End: Complemental strand, 10644 - 10481
Alignment:
| Q |
482 |
ttcatcccaacaaagctttgtagccagagtggttttccccaatcctcctaaaccagttaacacaagtgtggagctaccacccctcagaagctccattttc |
581 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||| |||||||| || ||||| ||| | |||| |||||||||||| |
|
|
| T |
10644 |
ttcatcccaacaaagattggtagccagagtggtttttcccaaccctcccaaaccagtcaacacaagggttgagcttccatctctcaatagctccattttc |
10545 |
T |
|
| Q |
582 |
aacttgctaaatgctatatccaacccaacagtgaattttggattttcaggaacatcgaaaggac |
645 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |||||| ||||||||| |||||| | ||||||| |
|
|
| T |
10544 |
aacttgctaaatggtatatcaatcccaacaatgaattctggattttctggaacaccaaaaggac |
10481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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