View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13330_low_12 (Length: 229)
Name: NF13330_low_12
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38635755 - 38635545
Alignment:
| Q |
1 |
atttgctgttgctattataatgttcactttgttccattttcaaaggttgtgtttcctaaatacattgtatctctaaatttgttttgatggaactttcttt |
100 |
Q |
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| T |
38635755 |
atttgctgttgctattataatgttcactttgttccattttcaaaggttgtgtttcctcaatacattgtatctctaaatttgttttgatggaacttttttt |
38635656 |
T |
|
| Q |
101 |
cttgttgtattgtagaactttgttcctgcaacaagggtggaacaagctcagaagcctgcagaacctgaagttattgtcatcagctctgatgaagaatctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38635655 |
gttgttgtattgtagaactttgttcctgcaacaagggtggaacaagctcagaagcctgcagaatctgaagttattgtcatcagctctgatgaagaatctg |
38635556 |
T |
|
| Q |
201 |
aggaagtgaag |
211 |
Q |
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||||||||||| |
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| T |
38635555 |
aggaagtgaag |
38635545 |
T |
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