View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13330_low_2 (Length: 573)
Name: NF13330_low_2
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Complemental strand, 19857350 - 19856814
Alignment:
| Q |
19 |
ccaagagtcaccgtgctgagtcgttgatggctttttctgttggtttaacccggttcattatttcaagtgaaccagaaactgctaaagagattctttgcag |
118 |
Q |
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| T |
19857350 |
ccaagagtcaccgtgctgagtcgttgatggctttttctgttggtttaacccggttcattatttcaagtgaaccagaaactgctaaagagattctttgcag |
19857251 |
T |
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| Q |
119 |
ttctgcttttggtgatagaccagtgaaagaatcagcttacgagcttttgtttcatagggcaatggggtttgctccatatggagagtactggaggaatttg |
218 |
Q |
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| T |
19857250 |
ttctgcttttggtgatagaccagtgaaagaatcagcttacgagcttttgtttcatagggcaatggggtttgctccgtatggagagtactggaggaatttg |
19857151 |
T |
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| Q |
219 |
aggaggatttcttcaacccatttgttttgtcctaggaggattaatgggtttgaaggttttaggagtgaggttggtttgaaaatggttgagaggattaagt |
318 |
Q |
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| T |
19857150 |
aggaggatttcttcaacccatttgttttgtcctaggaggattaatgggtttgaaggttttaggagtgaggttggtttgaaaatggtggagaggattaagt |
19857051 |
T |
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| Q |
319 |
ttttgatgggtgatatgggtagtgttgaggtgaaaaaagttcttcattttggttcacttaataatgtgatgatgactgtgtttggaaaatgttatgattt |
418 |
Q |
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| T |
19857050 |
ttttgatgggtgatatgggtagtgttgaggtgaaaaaagttcttcattttggttcacttaataatgtgatgatgactgtgtttggaaaatgttatgattt |
19856951 |
T |
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| Q |
419 |
ctttgatggtgatggttttgagcttgaggagttggtgagtgaaggttatgagctgttgggtgtttttaactggagtgatcattttcctcttctgggttgg |
518 |
Q |
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| T |
19856950 |
ctttgatggtgatggtgttgagcttgaggagttggtgagtgaagggtatgagctgttgggtgtttttaactggagtgatcattttcctcttctgggttgg |
19856851 |
T |
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| Q |
519 |
ttggatttgcagggtgttaggaaaaggtgtagagctt |
555 |
Q |
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| T |
19856850 |
ttggatttgcagggtgttaagaaaaggtgtagagctt |
19856814 |
T |
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