View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13330_low_3 (Length: 401)
Name: NF13330_low_3
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 8734712 - 8735082
Alignment:
| Q |
18 |
atgctcgagtgatagctttacctgtacatcgtttaacaataataatttagaacatggactaaattgctttgccagcatttctcatttagaggtgaaatat |
117 |
Q |
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| T |
8734712 |
atgctcgagtgatagctttacctgtatatcatttaacaataataatttagaacatggactaaattgctttgccagcatttctcatttagaggtgaaatat |
8734811 |
T |
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| Q |
118 |
agtgctaagcaattaaacacatttgtaaagtaacttcttcggtgtaaaggagtgaaatcctacgtagtattatgcaattactgtaattaagagaaatgtt |
217 |
Q |
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| T |
8734812 |
agtg-taagcaattaaacacatttgtaaagtaacttcttcggtgtaaaggagtgaaatcctacgtagtattatgcaattactgtaattaagaggaatgtt |
8734910 |
T |
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| Q |
218 |
tgtgtgaaaatatatatcaactttaattgacttcttcaaatgcaaattgcttggctttcaaaatgggatccggcccacatactttcagatgggaaagata |
317 |
Q |
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| T |
8734911 |
tgtttgaaagtatatatcaactttaattgacttcttcaaatgcaaattgcttggctttcaaaatgggatccggcccacatactttcagatgggaaagata |
8735010 |
T |
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| Q |
318 |
ttgtgtctttgtctctatctctctcatacattgttatctttctcatcttatttattgtttctttttcatatt |
389 |
Q |
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| T |
8735011 |
ttgtgtctttgtctctatctctctcatacattgttatctttctcatcttatttgttgtttctttttcatatt |
8735082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 8715896 - 8716249
Alignment:
| Q |
18 |
atgctcgagtgatagctttacctgtacatcgtttaacaataataatttagaacatggactaaattgctttgccagcatttctcatttagaggtgaaa--- |
114 |
Q |
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| T |
8715896 |
atgctcaagtgataacttcacctg-acatcgtttaataatgataatttagaacatgaactaaattgctatgctagcatccctcactatgaggttaaaaat |
8715994 |
T |
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| Q |
115 |
tatagtgctaagcaattaaacacatttgtaaagtaacttcttcggtgtaaaggagtgaaatcctacgtagtattatgcaattactgtaattaagagaaat |
214 |
Q |
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| T |
8715995 |
tatggtgccatccaattaaatatatttgtaaagtaacttcttaggtgtaaaggagttaaatcctacattgtactatgcaattactgtaattaagaagaag |
8716094 |
T |
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| Q |
215 |
gtttgtgtgaaaatatatatcaactttaattgacttcttcaaatgcaaattgcttggctttcaaaatgggatccggcccacatactttcagatgggaaag |
314 |
Q |
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| T |
8716095 |
atttgtgcgaaagtatg----agcgataattgacttcttcaaatgacagtttcttggctttcaaaatgggatccagaccacctactttaaggtgggaaat |
8716190 |
T |
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| Q |
315 |
atattgtgtctttgtctctatctctctcatacattgttatctttctcatcttatttattg |
374 |
Q |
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| T |
8716191 |
acattgtgtctttgtctc-atctctctcatacatcgctctctttctcatcttacttattg |
8716249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 20428469 - 20428373
Alignment:
| Q |
18 |
atgctcgagtgatagctttacctgtacatcgtttaacaataataatttagaacatggactaaattgctttgccagcatttctcatttagaggtgaaa |
114 |
Q |
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| T |
20428469 |
atgctcgagtgataacattacatgtgtatcgtttaacattgataatttagatcatgaactaaattgctttgctagcatctctcagttagaggtgaaa |
20428373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 8712415 - 8712589
Alignment:
| Q |
35 |
ttacctgtacatcgtttaacaataataatttagaacatggactaaattgctttgccagcatttctcatttagaggtgaaatat------agtgctaagca |
128 |
Q |
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| T |
8712415 |
ttacatgtacatcatttaacaatgctaatttagaacatgaactaaaatgctttgctcgcatttcgcacgtagaggtcaaatattatacaaatactatgaa |
8712514 |
T |
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| Q |
129 |
attaaacacatttgtaaagtaacttcttcggtgtaaaggagt--gaaatcctacgtagtattatgcaattactgt |
201 |
Q |
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| T |
8712515 |
attaaactcgtttgtaaagtaacttcttcaatgtaaaggagtcaaaaatcccacatagtactacgcaattactgt |
8712589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 8725597 - 8725649
Alignment:
| Q |
115 |
tatagtgctaagcaattaaacacatttgtaaagtaacttcttcggtgtaaagga |
168 |
Q |
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| T |
8725597 |
tatagtggtatgcaattaaacacatctgtaaa-taacttcttcagtgtaaagga |
8725649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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