View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13330_low_5 (Length: 387)
Name: NF13330_low_5
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 42816119 - 42815761
Alignment:
| Q |
14 |
gagaagaatcttaaggaattcattcgcttcttggaggaacatcatgtggata---tgacaaatgtaaaggtgaataatcatgtcgaagcatcatctttca |
110 |
Q |
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| T |
42816119 |
gagaagaatcttaaggaattcattcgcttcttggaggaacatcatgtggataatatgacaaatgtaaaggtgaataatcatgtcgaagcatcaactttca |
42816020 |
T |
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| Q |
111 |
ctccagctttattagtttcgtactttgagtttaactcaaccttacaaattcaacttgtgacacgattcttcatnnnnnnnttaagccttatctcaacaag |
210 |
Q |
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| T |
42816019 |
ctctagctttattagtttcgtactttgagtttaactcaaccttacaaattcaacttgtgacacgattcttcataaaaaaattaagccttatctcaacaag |
42815920 |
T |
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| Q |
211 |
tatcatcaacttgtcgaatcttgaacctttttatgttgttgtctcatgcagaaacatccagttgatgatgatattatacctcccaataaacctgtggttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42815919 |
catcatcaacttgtcgaatcttgaacctttttatgttgttgtctcatgcagaaacatccagttgatgatgatattatacctcccaataaacctgtggttg |
42815820 |
T |
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| Q |
311 |
aggagcttcactttgagtacatagaaaatgtggggaactttgataccaatgtggaaaat |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42815819 |
aggagcttcactttgagtacatagaaaatgtggggaactttgataccaatgtggaaaat |
42815761 |
T |
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