View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13330_low_7 (Length: 357)

Name: NF13330_low_7
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13330_low_7
NF13330_low_7
[»] chr3 (10 HSPs)
chr3 (97-263)||(6943234-6943408)
chr3 (205-337)||(6787326-6787458)
chr3 (190-263)||(6940139-6940212)
chr3 (295-350)||(6943404-6943459)
chr3 (62-187)||(6787457-6787590)
chr3 (264-350)||(6859398-6859485)
chr3 (295-350)||(6940208-6940262)
chr3 (15-55)||(6943181-6943221)
chr3 (15-52)||(6940009-6940046)
chr3 (132-169)||(6940106-6940143)
[»] scaffold1063 (1 HSPs)
scaffold1063 (15-77)||(2855-2919)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 97 - 263
Target Start/End: Original strand, 6943234 - 6943408
Alignment:
Q  97 atgcattaagttacaaccatacaaagatccatgt--------aaaaactgtgcagcaattagccaagtctccaagggataaatgattgaaacttacctct 188  Q
    |||||||||||| ||||||||||||||||||| |        ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||     
T  6943234 atgcattaagtttcaaccatacaaagatccatatcaatttttaaaaactgtgcagcaattagctaagtctccaagagattaatgattgaaacttacctca 6943333  T
Q  189 tgatatttacgggcattcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 263  Q
    ||||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943334 tgataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6943408  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 6787458 - 6787326
Alignment:
Q  205 tcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagctgattttgaaaacttggctgttaagtcaagacaagctcttgc 304  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| || |||| ||||||||    
T  6787458 tcatgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaaacttggttgttaagacaggacatgctcttgc 6787359  T
Q  305 agttactttgttcttcagctgcaatctctcctt 337  Q
    ||||||||||||||||||||||||||| |||||    
T  6787358 agttactttgttcttcagctgcaatctatcctt 6787326  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
Q  190 gatatttacgggcattcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 263  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6940139 gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6940212  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 6943404 - 6943459
Alignment:
Q  295 aagctcttgcagttactttgttcttcagctgcaatctctccttgccactgatgatg 350  Q
    ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  6943404 aagctcttgcagttactttgttcttgagatgcaatctctccttgacactgatgatg 6943459  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 6787590 - 6787457
Alignment:
Q  62 taataaagatgtagtccaatcaaaatatatattcaatgcattaagttacaaccatacaaagatcca--------tgtaaaaactgtgcagcaattagcca 153  Q
    |||||||| | |||||||||||||||||| ||| |||||||| |||| || |||||||||||||||        | | ||||||||||||| |||||| |    
T  6787590 taataaaggtatagtccaatcaaaatatacattaaatgcattgagtttcacccatacaaagatccatatgaattttttaaaactgtgcagccattagcta 6787491  T
Q  154 agtctccaagggataaatgattgaaacttacctc 187  Q
    ||||||| | |  |||||| ||||||||||||||    
T  6787490 agtctcccaagagtaaatgcttgaaacttacctc 6787457  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 6859485 - 6859398
Alignment:
Q  264 gattttgaaaacttggctgttaagtcaagacaagctcttgcagttactt-tgttcttcagctgcaatctctccttgccactgatgatg 350  Q
    ||||||||||||||| |||| ||| || || | ||| ||||| || ||| ||||||||||||||| ||||||||||| ||||||||||    
T  6859485 gattttgaaaacttgcctgtcaagacaggagatgctgttgcaatttcttctgttcttcagctgcattctctccttgctactgatgatg 6859398  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 6940208 - 6940262
Alignment:
Q  295 aagctcttgcagttactttgttcttcagctgcaatctctccttgccactgatgatg 350  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  6940208 aagctctttcagttactt-gttcttcagatgcaatctctccttgacactgatgatg 6940262  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 6943181 - 6943221
Alignment:
Q  15 attttacacaacaaaaaatagagcatttataaatggaaaaa 55  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6943181 attttacacaataaaaaatagagaatttataaatggaaaaa 6943221  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 6940009 - 6940046
Alignment:
Q  15 attttacacaacaaaaaatagagcatttataaatggaa 52  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6940009 attttacacaagaaaaaatagagcatttacaaatggaa 6940046  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 6940106 - 6940143
Alignment:
Q  132 aaaactgtgcagcaattagccaagtctccaagggataa 169  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  6940106 aaaactgtgcagcaattagctaagtctccaagagataa 6940143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 2919 - 2855
Alignment:
Q  15 attttacacaaca--aaaaatagagcatttataaatggaaaaatttatttaataaagatgtagtc 77  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2919 attttacacaacacaaaaaatagagcatttataaatggaaaaatttatataataaagatgtagtc 2855  T

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