View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13330_low_8 (Length: 335)
Name: NF13330_low_8
Description: NF13330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13330_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 35499915 - 35500221
Alignment:
| Q |
11 |
agtgagatgaaagcaatagatcagaaaataaaccttaggaagtaaaaatagtcgaactacactgctatactggattttgaaatcattagcctgtccttga |
110 |
Q |
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| T |
35499915 |
agtgaaatgaaagcaatagatcagaaaataaaccttaggaagtaaaaatagtcgaactacactgctatactggattttgaaatcattagcctgtccttga |
35500014 |
T |
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| Q |
111 |
agccgcaagaatgacaggtgtaactcgacactatatcttcccctgcagagtaacacaaatttctatcattagatatttgatctttctcttgaaaggttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35500015 |
agccgcaagaatgacaggtgtaactcgacactatatcttcccctgcagagtaacacaaatttctatcattagatatttgatctttctcttgaaaggttgt |
35500114 |
T |
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| Q |
211 |
aaacggaatcagaagtatgcaaagcagtgataagaaacagaaactagttaaatgaacgtgtctgtgtatttaaaaggttaccttggtgtaaggattgcaa |
310 |
Q |
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| T |
35500115 |
aaacggaatcagaagtatgcaaagcagtgataagaaacagaaactagtt-aatgaacatgtctgtgtatttaaaaggttaccttggtgtaaggattgcaa |
35500213 |
T |
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| Q |
311 |
taccatca |
318 |
Q |
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|||||||| |
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| T |
35500214 |
taccatca |
35500221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 7071680 - 7071543
Alignment:
| Q |
38 |
ataaaccttaggaagtaaaaatagtcgaactacactgctatactggattttgaaatcattagcctgtccttgaagccgcaagaatgacaggtgtaactcg |
137 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| || |
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| T |
7071680 |
ataaaccttaggaagtaaaaataggcgaaccacactgctgtactggattttgaaatcgttagcctgtccctgaagccgcaaaaatgacaagtgtaattca |
7071581 |
T |
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| Q |
138 |
acactatatcttcccctgcagagtaacacaaatttcta |
175 |
Q |
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| T |
7071580 |
acactgtatcgtcctctgcacaataaagcaaatttcta |
7071543 |
T |
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